YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11494
Organism:	Caenorhabditis elegans
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11494.

Description	E-value	Query Range	Subject Range
gi\|62089202 - gi\|62089202\|dbj\|BAD93045.1\| adaptor-related protein complex 1, mu 1 subunit variant [Homo sapiens]	184.0	[0..15]	[181..35]
gi\|73966201 - gi\|73966201\|ref\|XP_548170.2\| PREDICTED: similar to Coatomer zeta-2 subunit (Zeta-2 coat protein) (Ze...	183.0	[0..6]	[184..75]
gi\|56119012, gi\|... - gi\|56119012\|ref\|NP_001007887.1\| adaptor-related protein complex 1, mu 1 subunit [Gallus gallus], gi\|... gi\|542177093\|ref... - PREDICTED: AP-1 complex subunit mu-1 isoform X2 [Zonotrichia albicollis]	181.0	[0..15]	[181..4]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFDTNPTS LYSIKGIVIL DQDGNRVLAK YYDRTTFGTV KEQKAFEKSL FSKTSRNTSA  60
   61 DILLLDGVTC LYRSNVDLYF YVLGSTRENE LFLDATLTCL YDAVSVVLRK NVEKKALIDS 120
  121 MDTIMLIIDE ICDEGIIMET DAQAVVQRTA LKSDEVSFSD QSVSQIGFSF MKSANEQFKW 180
  181 SLLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	2hf6A
Description:	No description for 2hf6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits