| Protein: | nlp-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 213 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nlp-4.
| Description | E-value | Query Range |
Subject Range |
|
|
136.0 | [0..1] | [104..39] |
|
|
134.0 | [0..3] | [110..40] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MPMDIFSEAQ MFRYEDFMDR WTNEKGEFDF KAYVTTDAYM ITPYVVIIHR CWESKEVPHR 60
61 CDRKIVQPIP PLNVTVNSKT PDEKKVYNFG KVDLRFKNPA EVTS
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.488 | N/A | N/A | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.418 | N/A | N/A | a.29.10 | Description not found. |
| View | Download | 0.313 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
| View | Download | 0.223 | N/A | N/A | d.145.1 | FAD-binding domain |
| View | Download | 0.206 | N/A | N/A | b.26.1 | SMAD/FHA domain |
| View | Download | 0.204 | N/A | N/A | a.8.3 | Families 57/38 glycoside transferase middle domain |
|
Region A: Residues: [105-213] |
1 11 21 31 41 51
| | | | | |
1 KMRSLILFVI LLVAFAAARP VSEEVDRVKR DYDPRTEAPR RLPADDDEVD GEDRVKRDYD 60
61 PRTDAPIRVP VDPEAEGEDR VKRDLSFSPN TEAPQPPPKH HPVPIESAN
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.242 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.230 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.230 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.219 | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
