YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11448
Organism:	Caenorhabditis elegans
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11448.

Description	E-value	Query Range	Subject Range
gi\|92889436 - gi\|92889436\|gb\|ABE89868.1\| Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula...	176.0	[0..1]	[147..217]
gi\|218198393 - gi\|218198393\|gb\|EEC80820.1\| hypothetical protein OsI_23398 [Oryza sativa Indica Group] gi\|222635764, gi... - gi\|53791820\|dbj\|BAD53765.1\| cysteine synthase [Oryza sativa Japonica Group], gi\|4574137\|gb\|AAD23908....	174.0	[0..1]	[144..212]
gi\|157748891 - gi\|157748891\|ref\|XP_001678159.1\| Hypothetical protein CBG00986 [Caenorhabditis briggsae AF16] gi\|39589200, gi\|... - gi\|39589200\|emb\|CAE57933.1\| Hypothetical protein CBG00986 [Caenorhabditis briggsae], gi\|187038624\|em...	172.0	[0..1]	[162..176]
gi\|118413359, gi... - gi\|86154513\|ref\|ZP_01072681.1\| cysteine synthase A [Campylobacter fetus subsp. fetus 82-40], gi\|8584...	169.0	[0..1]	[135..170]
gi\|67850867, gi\|... - gi\|67874931\|ref\|ZP_00504482.1\| Cysteine synthase K/M:Cysteine synthase K [Clostridium thermocellum A... gi\|196252125, gi... - gi\|196252125\|ref\|ZP_03150787.1\| cysteine synthase A [Clostridium thermocellum DSM 4150], gi\|19619839...	167.0	[0..1]	[136..175]
CE16252 - beta-synthase status:Confirmed UniProt:O45679 protein_id:CAB05778.1	165.0	[0..1]	[162..176]
gi\|75910354, gi\|... - gi\|75910354\|ref\|YP_324650.1\| cystathionine beta-synthase [Anabaena variabilis ATCC 29413], gi\|757040...	165.0	[0..1]	[145..175]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVCFGVGSGG TVTGVGRYLR AQKQNIGVYP VEPFESSVLS GFPRGPHKIH GIGAGLIPGN  60
   61 VDRSLFTEVL RVKSEDAMKM ARRLADEEAI LGEISSGANV VAAVELACRP ENIGKLIVTT 120
  121 VNSFAERYFS TELYSTLLSE VSKLPISTDE QAVDIAKKYL GL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.30103
Match:	1o58A
Description:	Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.80 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits