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View Structure Prediction Details

Protein: CE11422
Organism: Caenorhabditis elegans
Length: 321 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11422.

Description E-value Query
Range
Subject
Range
gi|39595573, gi|... - gi|39595573|emb|CAE67074.1| Hypothetical protein CBG12483 [Caenorhabditis briggsae], gi|187029117|em...
gi|157747281 - gi|157747281|ref|XP_001668735.1| Hypothetical protein CBG12483 [Caenorhabditis briggsae AF16]
199.0 [0..1] [321..1]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRGINPIYQ ALLAATFTWG VTALGASLVF IMRHQSKKLL DISLGFAAGV MTAASFWSLL  60
   61 APAIEIAEAD FEKWAFVPVA IGFAVGAGFV HLADTLLPSC VGDAGMTSLL SPPTRRSETE 120
  121 MSL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [124-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAREDLDVA ALARSVNEEH RERDRSVDMG SDKRPDVIPE EDYRQSWRRI LLLILAVTVH  60
   61 NIPEGLAVGV GFGSAGKTKQ ATFESAFNLA IGIGLQNFPE GLAVSLPLAA FGHSKLKAFW 120
  121 YGQLSGMVEP IAALFGAAAV IFMEPVLPYA LAFAAGAMIY VVVDDIIPEA QRNGNGKLAS 180
  181 LGCIIGFLVM MCMDVGLG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle