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View Structure Prediction Details

Protein: CE11364
Organism: Caenorhabditis elegans
Length: 610 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11364.

Description E-value Query
Range
Subject
Range
gi|187032648, gi... - gi|39582612|emb|CAE63931.1| Hypothetical protein CBG08508 [Caenorhabditis briggsae], gi|187032648|em...
gi|157748159 - gi|157748159|ref|XP_001669174.1| Hypothetical protein CBG08508 [Caenorhabditis briggsae AF16]
733.0 [0..99] [553..104]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLKFCDIKF LRKTFARTRH LCAGVWPVLH FTVILLSLIP VTFADGPAAP PATTEEPKST  60
   61 APPATTDVTQ TLVPSVYLPL GAGEPQQGRN ISSPSSLEVV VKCDPT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PARTIIGKAD NSFVKFNRDF KKECELFTCS NDVYQGDGDQ LEEIVNFDPA LYSKNAKAPK  60
   61 PEKPETNICS DKKATY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [183-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PEGSTPTSSI LFANEGNCYA KVGSTLITLL ETPETFAQVP RWLPANEDRL NLKSLFFSNE  60
   61 KSEIVERVPF VFESKKNDST AVTYQKCDTT CDKGSIVKIQ MNPGEYSMMV YLNPKECSSF 120
  121 RICFDPDRFL DDSKKPSCQD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [323-610]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFTIDVLFKS GVVVWGKKGR ASIIEMMSPY HDEDNVVGIE FGYGVKTSKG DLAGEFYIGN  60
   61 DHREFVQSDS SGYTSASSSK LAFFFPSDGC LRATAGIFSK KIASGKTMAN EKVTVVGKLF 120
  121 GESGELITVQ TPEVATTTTA RPIKNIAATT TVAPLQLIAD ASLVDNDLQS NLEATGVYVD 180
  181 GKWWWWAIYL GFVLGTLLTL AIGGGICYVL RRTVYGYWYR GMYRRYGCDV SATTAGLTGV 240
  241 GFGATTTAMQ TISPGKTGAT TLGSTSSTTG ITETTGTTGS TATTGTMA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle