| Protein: | htp-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 739 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for htp-3.
| Description | E-value | Query Range |
Subject Range |
|
|
276.0 | [0..26] | [393..21] |
|
Region A: Residues: [1-283] |
1 11 21 31 41 51
| | | | | |
1 MDESFDSSVV PGSLTSDDRA IFNEQTLKNG DENSKSSLEV MANCVYLANS TILRERKVIP 60
61 AEYFQDFQVY GDVSGYTLRQ DIPEGRSVSS KLLASHDAIR QKLLQKLAIV VEESLNTNPV 120
121 ETFVWTFVYD STTSASAEIG YGGRKSKFVV NYLNMDDTAQ QFCKMFSELR NVLSLLRPLP 180
181 RGLIPSMKVA YRGEPEFVPG FQQVDDFVNP EQINLGAVSF PHGNGFQFAY ASKFMVEQPS 240
241 AIRPPVEVSH FEDDLLNSTI TPIEVVRDNT MNCAENPELD EIY
|
| Detection Method: |  |
| Confidence: | 3.75 |
| Match: | 1s2hA |
| Description: | The Mad2 spindle checkpoint protein possesses two distinct natively folded states |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.643047718552136 | bayes_pls_golite062009 |
| protein binding | 0.123037566638484 | bayes_pls_golite062009 |
|
Region A: Residues: [284-393] |
1 11 21 31 41 51
| | | | | |
1 FSPGRQEVRM DEDVANESIR CNPSMASEMM VLQSEYNVLI ADNDEVPMVV ERERSPIVKA 60
61 AKKRSTRAPA VPITPTEPAS PVESPVKEQP QKAPKAQMRR SSKRTTKNNE
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [394-569] |
1 11 21 31 41 51
| | | | | |
1 RCEQKEEEPI VNPKRRSARR LVPPVEVDEQ PEEQNDDDAQ NSLQIDSDAQ NSLQIDSDAI 60
61 ITSPEKRNES KSAIPEEAAD LDNTTSEKQE SSTARYGVSN TSINRKKPDP VANPVSEEAQ 120
121 VDLANGSIPD KRPRKRKYGR VSSILDVADL PTDDTVEEDV RESPIYGRVP SILDVA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [570-739] |
1 11 21 31 41 51
| | | | | |
1 RAEENDAQND AQDAQNEIAV EGLADLSIDT EQHEEAAPIN VTGHQSESVP IIVTEHQSEE 60
61 AQTVVTEQPA GAASVIAAER HYGRVSSILD VAGSFADVDP SGAAPAIATE RHYGRVSSIL 120
121 DVAGSLSDVD PQEDTESSTQ NQSTSKKFKP NPPKAMRYGQ SPNMPSRRGN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
