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View Structure Prediction Details

Protein: CE11200
Organism: Caenorhabditis elegans
Length: 518 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11200.

Description E-value Query
Range
Subject
Range
gi|9507011, gi|2... - gi|9507011|ref|NP_062013.1| protein tyrosine phosphatase, receptor type, S [Rattus norvegicus], gi|2...
401.0 [0..65] [516..1182]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDCNWTNPL VTVSNTAALL ASGYALWSCA SKKNKKDINS ETKTLDKRPQ TAELVKDEKN  60
   61 SNSEEKKTAS ANEVPAQKKL NSKEEVKKEK KKSEDDLLDV KKTVSKEDDK KKVDKKDGSK 120
  121 KLSKKKLKEE KKEKSKKVNK EKKISKTES

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #2
Region A:
Residues: [150-518]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEDNEQPPE PGSDPRKIWA FKAAKMKCQA ISKLHQDKIK GYMPPNCTYT AYEANPDLNR  60
   61 YADVRCIEET RVVLKNHDRD YIHASWMRMP GKDQSTYITT QGPLPETLSD FWHMIYQEKI 120
  121 AYVLMLCTLF EGGVEKCALY YPEKLGEVVK FGKYEITLTE CKEEAIAGTI LNSLTVINTE 180
  181 DATSEPLYMN HVQVPWWPDQ LAPEDARPMI ELYKWVKKVN PKEKPICVHC SAGVGRTATF 240
  241 VGIDYATIRI MENPNIEMLD IVREMRAMRF QAVQSHMQFL FLYVVLMEYF IGEGVVERTG 300
  301 QIDTFMTQYK KHAQKKLAKQ YLQRKQKVVV KDAFPFNGSF QIIFFEPPPI ERGGGLGTDK 360
  361 RIFLGHIFV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle