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View Structure Prediction Details

Protein: tag-345
Organism: Caenorhabditis elegans
Length: 439 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-345.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
457.0 [0..3] [439..1237]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLADLMEVE NGDHSINQKH VQITFFSKDE EIPQIPDAVF DVPTGAECDD MNLLLNKTIE  60
   61 ANDGAWKERR FEFLVGETFL RTSLAEFIEE YEVETETILK VECVIGI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 28.004365
Match: PF08154.3
Description: No description for PF08154.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAPKPLHDIQ APDWVSSVQI ANGHIFSTTY GGDIVIVDRK GKETKLAVNS ANRLLKCISI  60
   61 VKAPSKKNQL DGTEFVVGGE NQLLTLYAIE KGALVEKLIL RGHERAVECV SVNSDSTRAI 120
  121 SGSVDTNLKI WNLDASDEAT TYEKEEEEES AKKRRKKETK TKVPMVTIGG HRDKVSAVEW 180
  181 CPWNSGHAFS CSWDHTIVEW DLELAGEISR IKGPKSFTSI DLHPKSDLLI SSCTDAIPRL 240
  241 YDPKNRDGSM VKQSFIGHQN GWVEAVKWNP LDTNQFVSVS TDKTAKMWDV RSSKSSLFDI 300
  301 HGHDDRILCA TWNEGLIATG SADCTIKIFE TA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle