YRC Public Data Repository - Protein Structure Prediction

Protein:	CE11152
Organism:	Caenorhabditis elegans
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE11152.

Description	E-value	Query Range	Subject Range
gi\|18144079, gi\|... - gi\|18309403\|ref\|NP_561337.1\| glycerophosphodiester phosphodiesterase [Clostridium perfringens str. 1...	247.0	[0..28]	[296..1]
gi\|110800595, gi... - gi\|110800595\|ref\|YP_694881.1\| putative glycerophosphoryl diester phosphodiesterase [Clostridium perf...	246.0	[0..28]	[296..1]
gi\|110801784, gi... - gi\|110801784\|ref\|YP_697749.1\| glycerophosphoryl diester phosphodiesterase [Clostridium perfringens S...	244.0	[0..28]	[296..1]
gi\|25487769 - pir\|\|D84112 glycerophosphoryl diester phosphodiesterase glpQ [imported] - Bacillus halodurans (strai... gi\|10176324, gi\|... - gi\|15616262\|ref\|NP_244567.1\| glycerophosphoryl diester phosphodiesterase [Bacillus halodurans C-125]...	238.0	[0..22]	[287..30]
gi\|223488779, gi... - gi\|254479407\|ref\|ZP_05092739.1\| Glycerophosphoryl diester phosphodiesterase family protein [Carboxyd... gi\|20807473 - gi\|20807473\|ref\|NP_622644.1\| Glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon... gi\|20807473, gi\|... - gi\|20807473\|ref\|NP_622644.1\| glycerophosphoryl diester phosphodiesterase [Thermoanaerobacter tengcon...	238.0	[0..30]	[289..2]
gi\|42738491, gi\|... - gi\|42782565\|ref\|NP_979812.1\| glycerophosphoryl diester phosphodiesterase, putative [Bacillus cereus ...	235.0	[0..1]	[296..13]
gi\|229080695, gi... - gi\|229080695\|ref\|ZP_04213214.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus Rock4-2... gi\|29897153, gi\|... - gi\|30021598\|ref\|NP_833229.1\| glycerophosphoryl diester phosphodiesterase [Bacillus cereus ATCC 14579... gi\|229151681, gi... - gi\|229151681\|ref\|ZP_04279882.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus m1550],... gi\|228637389, gi... - gi\|229146049\|ref\|ZP_04274426.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-ST... gi\|229128763, gi... - gi\|229128763\|ref\|ZP_04257740.1\| Glycerophosphoryl diester phosphodiesterase [Bacillus cereus BDRD-Ce...	234.0	[0..1]	[296..13]
gi\|49180232, gi\|... - gi\|49186305\|ref\|YP_029557.1\| glycerophosphoryl diester phosphodiesterase, putative [Bacillus anthrac... gi\|254759133 - gi\|254759133\|ref\|ZP_05211159.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|47528844, gi\|... - gi\|47528844\|ref\|YP_020193.1\| glycerophosphoryl diester phosphodiesterase, putative [Bacillus anthrac... gi\|30258091, gi\|... - gi\|30263456\|ref\|NP_845833.1\| glycerophosphoryl diester phosphodiesterase, putative [Bacillus anthrac... gi\|21401426, gi\|... - gi\|65320784\|ref\|ZP_00393743.1\| COG0584: Glycerophosphoryl diester phosphodiesterase [Bacillus anthra... gi\|164711918, gi... - gi\|165872365\|ref\|ZP_02217001.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|227007156, gi... - gi\|227813667\|ref\|YP_002813676.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anth... gi\|167637348, gi... - gi\|167637348\|ref\|ZP_02395628.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|229600072, gi... - gi\|229600072\|ref\|YP_002867704.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anth... gi\|167631815, gi... - gi\|167631815\|ref\|ZP_02390142.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|254686071 - gi\|254686071\|ref\|ZP_05149930.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|170708572, gi... - gi\|170708572\|ref\|ZP_02899013.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|254723472 - gi\|254723472\|ref\|ZP_05185260.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|170666948, gi... - gi\|170689081\|ref\|ZP_02880280.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|254738543 - gi\|254738543\|ref\|ZP_05196246.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|190564348, gi... - gi\|190565031\|ref\|ZP_03017952.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|254740706 - gi\|254740706\|ref\|ZP_05198397.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|177654641, gi... - gi\|177654641\|ref\|ZP_02936465.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr... gi\|254752861 - gi\|254752861\|ref\|ZP_05204897.1\| putative glycerophosphoryl diester phosphodiesterase [Bacillus anthr...	234.0	[0..1]	[296..13]
gi\|49479482, gi\|... - gi\|49479482\|ref\|YP_037592.1\| glycerophosphoryl diester phosphodiesterase [Bacillus thuringiensis ser...	234.0	[0..1]	[296..13]
gi\|47558780, gi\|... - gi\|47564628\|ref\|ZP_00235673.1\| glycerophosphoryl diester phosphodiesterase [Bacillus cereus G9241], ...	233.0	[0..1]	[296..13]

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Predicted Domain #1

Region A:
Residues: [1-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNSHLSCLL CTNSNDNPLM TQHREVFFKK LNFGGHRGSP KRAPENTIES LKKAKEDGCD  60
   61 LVEFDIHMSS DGVPLLMHDD TTERTGNAKL KVEHSTWQQL EAVVLNPVNG VNAKIPRLNE 120
  121 AIDFCVENGL KMLFDMKNDN LKLMEAVSEE IKKRNLYDQV MVSSFNPIVP WRLKKIDPKI 180
  181 ITGITVDRSY YSYSDDHRKS PFSTSFFAHF WNEILDEINM IIQPLYILPR FLGVDVVMIS 240
  241 FQLISENAVR ESNEKGFSVI SWTVNDEDYM RILTKLNVPF LTDIGSEVDR KMFMKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	2oogA
Description:	No description for 2oogA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits