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View Structure Prediction Details

Protein: CE10896
Organism: Caenorhabditis elegans
Length: 342 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10896.

Description E-value Query
Range
Subject
Range
gi|47565158, gi|... - gi|47565158|ref|ZP_00236201.1| spore germination protein IA [Bacillus cereus G9241], gi|47557944|gb|...
163.0 [0..73] [280..7]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIRSRGQPF RKSKCDQSID NKNQFEVLKE EARVCASIAR TRMLVPLTAI VTTSLPMVAA  60
   61 IAFCAKNRKT V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HAKNKNKNKS SKSAKSSKST RGASKSGKSR RSSKAKHSKR SSKSSKKGTS GKSGKGSSKR  60
   61 GGKSSKSSKS KKVKTATTSG SQVSTVSAAT GVSDKQSNSS KSSRKSSKSS KSRKNRRLDS 120
  121 DAQKKMEKSG KSGKVALIPK TQQTTGSQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 2j63A
Description: No description for 2j63A was found.

Predicted Domain #3
Region A:
Residues: [220-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGHSLAEEVN SIKHSKEMNV APAKLQYQTL GGVNQIELKN TSNERKAYKI KCSDNSLYRV  60
   61 NPVYGFAEPR SSVKIDVLRL NGEQKTDKLV LLTANANGST NPHEAFANQA EHREMMVVPL 120
  121 VAA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1rowA
Description: Structure of SSP-19, an MSP-domain protein like family member in Caenorhabditis elegans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.653234420802729 bayes_pls_golite062009
protein binding 0.170808849690486 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle