| Protein: | CE10896 |
| Organism: | Caenorhabditis elegans |
| Length: | 342 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10896.
| Description | E-value | Query Range |
Subject Range |
|
|
163.0 | [0..73] | [280..7] |
|
Region A: Residues: [1-71] |
1 11 21 31 41 51
| | | | | |
1 MRIRSRGQPF RKSKCDQSID NKNQFEVLKE EARVCASIAR TRMLVPLTAI VTTSLPMVAA 60
61 IAFCAKNRKT V
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [72-219] |
1 11 21 31 41 51
| | | | | |
1 HAKNKNKNKS SKSAKSSKST RGASKSGKSR RSSKAKHSKR SSKSSKKGTS GKSGKGSSKR 60
61 GGKSSKSSKS KKVKTATTSG SQVSTVSAAT GVSDKQSNSS KSSRKSSKSS KSRKNRRLDS 120
121 DAQKKMEKSG KSGKVALIPK TQQTTGSQ
|
| Detection Method: | |
| Confidence: | 1.03 |
| Match: | 2j63A |
| Description: | No description for 2j63A was found. |
|
Region A: Residues: [220-342] |
1 11 21 31 41 51
| | | | | |
1 VGHSLAEEVN SIKHSKEMNV APAKLQYQTL GGVNQIELKN TSNERKAYKI KCSDNSLYRV 60
61 NPVYGFAEPR SSVKIDVLRL NGEQKTDKLV LLTANANGST NPHEAFANQA EHREMMVVPL 120
121 VAA
|
| Detection Method: | |
| Confidence: | 34.69897 |
| Match: | 1rowA |
| Description: | Structure of SSP-19, an MSP-domain protein like family member in Caenorhabditis elegans |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.653234420802729 | bayes_pls_golite062009 |
| protein binding | 0.170808849690486 | bayes_pls_golite062009 |
