YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10770
Organism:	Caenorhabditis elegans
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10770.

Description	E-value	Query Range	Subject Range
PRKCD - protein kinase C, delta	129.0	[0..1]	[111..131]
gi\|33304013 - gi\|33304013\|gb\|AAQ02514.1\| protein kinase C, delta [synthetic construct]	129.0	[0..1]	[111..131]
gi\|74188228 - gi\|74188228\|dbj\|BAE25785.1\| unnamed protein product [Mus musculus]	129.0	[0..1]	[111..131]
gi\|109039102 - gi\|109039102\|ref\|XP_001083320.1\| PREDICTED: similar to protein kinase C, delta [Macaca mulatta]	129.0	[0..1]	[111..595]
gi\|53131222, gi\|... - gi\|57524924\|ref\|NP_001006133.1\| protein kinase C, delta [Gallus gallus], gi\|53131222\|emb\|CAG31801.1\|...	128.0	[0..1]	[111..131]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIILQLQTP HVSNTYDGSK VHEVAGHKFR AAALLQPTCC AFCSKIIYGL GKQGYRCLGC  60
   61 ETVVHKKCHA SMITCCVYDS SRRSSLASVS TSTKNWPSKS SSAPSSPTAG STAKKEYEKV 120
  121 KLSRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.39794
Match:	1xa6A
Description:	Crystal Structure of the Human Beta2-Chimaerin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0980674097362609	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: