YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10642
Organism:	Caenorhabditis elegans
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10642.

Description	E-value	Query Range	Subject Range
gi\|14018320 - gi\|14018320\|emb\|CAC38353.1\| aminopeptidase [Aspergillus niger]	196.0	[0..4]	[210..22]
gi\|159125163 - gi\|159125163\|gb\|EDP50280.1\| aminopeptidase [Aspergillus fumigatus A1163] gi\|66849556, gi\|... - gi\|70994150\|ref\|XP_751922.1\| aminopeptidase [Aspergillus fumigatus Af293], gi\|66849556\|gb\|EAL89884.1...	194.0	[0..4]	[210..91]
gi\|169773399 - gi\|169773399\|ref\|XP_001821168.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769029 - gi\|83769029\|dbj\|BAE59166.1\| unnamed protein product [Aspergillus oryzae]	193.0	[0..4]	[210..21]
gi\|28678 - gi\|28678\|emb\|CAA31640.1\| unnamed protein product [Homo sapiens]	192.0	[0..2]	[210..74]
gi\|114658838 - gi\|114658838\|ref\|XP_523153.2\| PREDICTED: membrane alanine aminopeptidase [Pan troglodytes]	191.0	[0..2]	[210..74]
gi\|114192682, gi... - gi\|115397799\|ref\|XP_001214491.1\| aminopeptidase 2 [Aspergillus terreus NIH2624], gi\|114192682\|gb\|EAU...	191.0	[0..4]	[210..21]
gi\|91094235 - gi\|91094235\|ref\|XP_968099.1\| PREDICTED: similar to CG1009-PC, isoform C, partial [Tribolium castaneu...	190.0	[0..3]	[210..9]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELLTTYRP IKILLQLDPN LGNNSYNGRV KIDYEFTGET SEIKIQTSRD FQWTSVRLAT  60
   61 FYDFNEGCPV YASVDCENYV HDAESEILTL PLGNPLTPET TENGFYIELE WTGPINPQGE 120
  121 TTGLYAIDES TIEANMKDGN AHKVFPCYEG GVSAKFWLTV ITDERTRVET NMDDAGHEEF 180
  181 EGRVKNNFLK EEELTIEDVY IYVTPIIDME

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1z1wA
Description:	Crystal structures of the tricorn interacting facor F3 from Thermoplasma acidophilum, a zinc aminopeptidase in three different conformations
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits