YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10618
Organism:	Caenorhabditis elegans
Length:	130 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10618.

Description	E-value	Query Range	Subject Range
gi\|68355680 - gi\|68355680\|ref\|XP_689911.1\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, F is...	143.0	[0..3]	[129..932]
gi\|249840 - gi\|249840\|gb\|AAB22251.1\| LAR, leukocyte common antigen-related protein=transmembrane receptor phosph...	141.0	[0..3]	[129..1506]
gi\|34980829 - gi\|34980829\|gb\|AAH57166.1\| Ptprf protein [Mus musculus]	141.0	[0..3]	[129..1148]
gi\|732919, gi\|21... - gi\|732919\|emb\|CAA58495.1\| leucocyte common antigen-related protein (LAR) [Rattus norvegicus], pir\|\|A...	141.0	[0..3]	[129..909]
gi\|485747, gi\|21... - gi\|485747\|gb\|AAA64460.1\| protein-tyrosine phosphatase CRYPalpha1 isoform [Gallus gallus], gi\|4604866...	141.0	[0..3]	[129..1119]
gi\|73977253 - gi\|73977253\|ref\|XP_532613.2\| PREDICTED: similar to Receptor-type tyrosine-protein phosphatase F prec...	141.0	[0..3]	[129..1525]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAINLIEAV NYDTNPVVVH CSAGVGRSGT IVGISLIMDK MIQGINCKDM KKLVEEIRNQ  60
   61 RHYAIQTEAQ YMYIHRVLLE YFLELHKETY EGLLLTKNYE EKYAKWLDDY NTYAEANDRT 120
  121 QAAKAARAAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1larA
Description:	RPTP Lar
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits