YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-10
Organism:	Caenorhabditis elegans
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-10.

Description	E-value	Query Range	Subject Range
gi\|109498722 - gi\|109498722\|ref\|XP_001065881.1\| PREDICTED: similar to ATPase, H+ transporting, V1 subunit G, isofor...	157.0	[0..1]	[117..105]
VATG1_BOVIN - V-type proton ATPase subunit G 1 OS=Bos taurus GN=ATP6V1G1 PE=1 SV=3	130.0	[0..1]	[116..1]
VATG1_MOUSE - V-type proton ATPase subunit G 1 OS=Mus musculus GN=Atp6v1g1 PE=1 SV=3	130.0	[0..1]	[116..1]
gi\|109018966, gi... - gi\|109018966\|ref\|XP_001110456.1\| PREDICTED: similar to ATPase, H+ transporting, lysosomal, V1 subuni...	129.0	[0..1]	[117..1]
ATP6V1G3 - ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G3	128.0	[0..1]	[117..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQTQGIQQ LLAAEKRAAE KINEARKRKL QRTKQAKQEA QAEVEKYKQQ REAEFKAFEQ  60
   61 QYLGTKEDIE SKIRRDTEDQ ISGMKQSVAG NKQAVIVRLL QLVCDIKPEL HHNLTLQKKL 120
  121 HGQFAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	49.721246
Match:	PF03179.6
Description:	No description for PF03179.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits