YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10546
Organism:	Caenorhabditis elegans
Length:	168 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10546.

Description	E-value	Query Range	Subject Range
gi\|157752660 - gi\|157752660\|ref\|XP_001680042.1\| Hypothetical protein CBG20772 [Caenorhabditis briggsae AF16] gi\|39591288, gi\|... - gi\|39591288\|emb\|CAE73341.1\| Hypothetical protein CBG20772 [Caenorhabditis briggsae], gi\|187023045\|em...	270.0	[0..1]	[167..1]
gi\|149031651, gi... - gi\|27717677\|ref\|XP_216859.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	129.0	[0..42]	[142..16]
NDUA7_MOUSE - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Mus musculus GN=Ndufa7 PE=1 SV=3	128.0	[0..42]	[142..16]
gi\|111662313 - gi\|111662313\|gb\|ABH12237.1\| mitochondrial complex I subunit NDUFA7 [Pongo pygmaeus]	124.0	[0..1]	[142..1]
gi\|111662311 - gi\|111662311\|gb\|ABH12236.1\| mitochondrial complex I subunit NDUFA7 [Gorilla gorilla]	124.0	[0..1]	[142..1]
gi\|81294173 - gi\|81294173\|gb\|AAI07893.1\| NDUFA7 protein [Homo sapiens]	123.0	[0..42]	[142..24]
NDUA7_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 OS=Gorilla gorilla gorilla GN=NDUFA7 PE...	123.0	[0..42]	[142..16]

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Predicted Domain #1

Region A:
Residues: [1-168]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGRKIAAAT VQNRTQTPFW NWLKQKLLAS DRLPITPPPG IAGPDGKAVY QNPLRFPNTQ  60
   61 SARPCSAELP ALPGGVHHKL ADNYYLTRDG RRNVDAPKVL YSSGEFVGGE KAQPAQVNQG 120
  121 VATNFGLTAP TPGFGAEWSR SKQNELASQQ KNTEFEYLQR FDKFTKSA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.11
Match:	2fftA
Description:	NMR structure of Spinach Thylakoid Soluble Phosphoprotein of 9 kDa in SDS Micelles
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits