YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10544
Organism:	Caenorhabditis elegans
Length:	90 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10544.

Description	E-value	Query Range	Subject Range
gi\|157752662 - gi\|157752662\|ref\|XP_001680043.1\| Hypothetical protein CBG20773 [Caenorhabditis briggsae AF16] gi\|39591289, gi\|... - gi\|39591289\|emb\|CAE73342.1\| Hypothetical protein CBG20773 [Caenorhabditis briggsae], gi\|187023046\|em...	143.0	[0..1]	[90..1]
CE04818 - status:Confirmed UniProt:Q21817 protein_id:AAA80402.1	142.0	[0..1]	[90..1]
gi\|125979515\|ref... - GA20453-PA [Drosophila pseudoobscura], GA20453 [Drosophila pseudoobscura pseudoobscura] gi\|125979515, gi... - gi\|54640773\|gb\|EAL29524.1\| GA20453 [Drosophila pseudoobscura pseudoobscura], gi\|125979515\|ref\|XP_001...	138.0	[0..1]	[90..1]
gi\|195328392, gi... - gi\|195328392\|ref\|XP_002030899.1\| GM25702 [Drosophila sechellia], gi\|194119842\|gb\|EDW41885.1\| GM25702... gi\|194197281, gi... - gi\|195591082\|ref\|XP_002085272.1\| GD14709 [Drosophila simulans], gi\|194197281\|gb\|EDX10857.1\| GD14709 ... CG7580-PA, CG758... - This gene is referred to in FlyBase by the symbol Dmel\CG7580 (CG7580, FBgn0036728). It is a protein... gi\|220957970, gi... - gi\|220957970\|gb\|ACL91528.1\| CG7580-PA [synthetic construct], gi\|220950964\|gb\|ACL88025.1\| CG7580-PA [...	138.0	[0..1]	[90..1]
QCR8_BOVIN - Cytochrome b-c1 complex subunit 8 OS=Bos taurus GN=UQCRQ PE=1 SV=3	135.0	[0..8]	[90..1]
gi\|50755204 - gi\|50755204\|ref\|XP_414651.1\| PREDICTED: similar to GekBS039P isoform 2 [Gallus gallus]	134.0	[0..2]	[90..30]
QCR8_AILME - Cytochrome b-c1 complex subunit 8 OS=Ailuropoda melanoleuca GN=UQCRQ PE=3 SV=3	134.0	[0..8]	[90..1]
gi\|73971160 - gi\|73971160\|ref\|XP_852164.1\| PREDICTED: similar to low molecular mass ubiquinone-binding protein [Ca...	133.0	[0..8]	[90..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPTVVSMGK HFGNLGKMYG EHRFALAPNE QKAYKGFFDQ AFVKTFKTYV WDQWYYYIPQ  60
   61 TIGAYLLYDW AKKTNVAANR KNPADFANDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1be3G
Description:	Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ubiquinol-cytochrome-c reductase activity	11.4657297014599	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	11.4657297014599	bayes_pls_golite062009
ubiquinone binding	8.14330726546719	bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors	8.07004376323578	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	5.53710572481351	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	5.38577566963514	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	4.79259194111116	bayes_pls_golite062009
oxidoreductase activity	4.78909275746755	bayes_pls_golite062009
cation transmembrane transporter activity	4.5536689474984	bayes_pls_golite062009
ion transmembrane transporter activity	4.36122531415799	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.96296151827022	bayes_pls_golite062009
substrate-specific transporter activity	3.77517262558965	bayes_pls_golite062009
quinone binding	2.82234066289866	bayes_pls_golite062009
binding	1.3775057351058	bayes_pls_golite062009
cofactor binding	0.937113949001792	bayes_pls_golite062009
catalytic activity	0.442357802307605	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: