YRC Public Data Repository - Protein Structure Prediction

Protein:	plp-1
Organism:	Caenorhabditis elegans
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for plp-1.

Description	E-value	Query Range	Subject Range
gi\|187034608, gi... - gi\|39593637\|emb\|CAE61929.1\| Hypothetical protein CBG05926 [Caenorhabditis briggsae], gi\|187034608\|em... gi\|157756121 - gi\|157756121\|ref\|XP_001670404.1\| Hypothetical protein CBG05926 [Caenorhabditis briggsae AF16]	333.0	[0..1]	[226..1]
gi\|220953144, gi... - gi\|220953144\|gb\|ACL89115.1\| Pur-alpha-PA [synthetic construct], gi\|220942990\|gb\|ACL84038.1\| Pur-alph... FBpp0302758, Pur... - The gene Purine-rich binding protein-Ă?Ă?Âą is referred to in FlyBase by the symbol Dmel\Pur-Ă...	315.0	[0..5]	[226..32]
gi\|42411030, gi\|... - gi\|51858926\|gb\|AAH81472.1\| Purine-rich element binding protein A [Danio rerio], gi\|49227661\|ref\|NP_0...	310.0	[0..1]	[226..25]
gi\|47227175 - gi\|47227175\|emb\|CAG00537.1\| unnamed protein product [Tetraodon nigroviridis]	310.0	[0..3]	[226..28]
gi\|84569968 - gi\|84569968\|gb\|AAI10595.1\| PURA protein [Homo sapiens]	309.0	[0..4]	[226..27]
gi\|157131521, gi... - gi\|157131521\|ref\|XP_001662270.1\| pur-alpha [Aedes aegypti], gi\|108871498\|gb\|EAT35723.1\| pur-alpha [A...	309.0	[0..10]	[226..33]
gi\|118785303, gi... - gi\|118785303\|ref\|XP_314537.3\| ENSANGP00000016990 [Anopheles gambiae str. PEST], gi\|116128020\|gb\|EAA0...	309.0	[0..10]	[226..40]
gi\|89243271 - gi\|89243271\|gb\|ABD64790.1\| Pur-Alpha [Drosophila virilis]	309.0	[0..6]	[226..32]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGSVERGT KRAEDSLATH QLTVQYKRYY IDVNENTRGR YIKIAELGTN YKSRIILSIV  60
   61 AAKAIVSEIS KMLALIDEPS TGEHAPKESS LIKSETLNVD GRKFYVDLKE NVRGRFLRIA 120
  121 QMPMNPRQTR QQIAIPSDGI AEIHKVLTEY LAKF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEGHEQENTN TPKITAENKS FLFHSGKNDR GEFVRISEIK LNSGYRNAIT VPMSALVDFR  60
   61 KELDNIIANQ GK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.536	N/A	N/A	d.9.2	Description not found.
View	Download	0.524	N/A	N/A	d.105.1	Clathrin adaptor appendage, alpha and beta chain-specific domain
View	Download	0.448	N/A	N/A	d.175.1	Penicillin binding protein dimerisation domain
View	Download	0.340	N/A	N/A	b.48.1	mu transposase, C-terminal domain
View	Download	0.315	N/A	N/A	d.129.1	TATA-box binding protein-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits