YRC Public Data Repository - Protein Structure Prediction

Protein:	cfim-1
Organism:	Caenorhabditis elegans
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cfim-1.

Description	E-value	Query Range	Subject Range
gi\|157747311 - gi\|157747311\|ref\|XP_001668750.1\| Hypothetical protein CBG12500 [Caenorhabditis briggsae AF16] gi\|187029132, gi... - gi\|39595588\|emb\|CAE67089.1\| Hypothetical protein CBG12500 [Caenorhabditis briggsae], gi\|187029132\|em...	401.0	[0..1]	[227..1]
gi\|145020484, gi... - gi\|39952067\|ref\|XP_363750.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA56025....	385.0	[0..7]	[226..3]
gi\|85089870 - gi\|85089870\|ref\|XP_958148.1\| hypothetical protein NCU09014 [Neurospora crassa OR74A] gi\|32421925, gi\|... - gi\|32421925\|ref\|XP_331406.1\| hypothetical protein [Neurospora crassa], gi\|28919478\|gb\|EAA28912.1\| hy...	382.0	[0..7]	[227..3]
gi\|46125059, gi\|... - gi\|46125059\|ref\|XP_387083.1\| hypothetical protein FG06907.1 [Gibberella zeae PH-1], gi\|42553653\|gb\|E...	381.0	[0..7]	[227..3]
gi\|159125937 - gi\|159125937\|gb\|EDP51053.1\| cleavage and polyadenylation specific factor 5 [Aspergillus fumigatus A1... gi\|66845767, gi\|... - gi\|70985266\|ref\|XP_748139.1\| cleavage and polyadenylation specific factor 5 [Aspergillus fumigatus A...	377.0	[0..7]	[227..59]
gi\|88183799, gi\|... - gi\|88183799\|gb\|EAQ91267.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	376.0	[0..7]	[227..3]
gi\|83768238 - gi\|83768238\|dbj\|BAE58377.1\| unnamed protein product [Aspergillus oryzae] gi\|238485582, gi... - gi\|238485582\|ref\|XP_002374029.1\| cleavage and polyadenylation specific factor 5 [Aspergillus flavus ... gi\|169771819 - gi\|169771819\|ref\|XP_001820379.1\| hypothetical protein [Aspergillus oryzae RIB40]	374.0	[0..7]	[227..3]
gi\|158595461, gi... - gi\|24370468\|emb\|CAC70149.1\| putative pre-mrna cleavage factor [Brugia malayi], gi\|170584698\|ref\|XP_0...	371.0	[0..5]	[223..9]
gi\|169616107, gi... - gi\|169616107\|ref\|XP_001801469.1\| hypothetical protein SNOG_11226 [Phaeosphaeria nodorum SN15], gi\|11...	371.0	[0..18]	[226..4]
gi\|90301302, gi\|... - gi\|90301302\|gb\|EAS30933.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119182817\|re...	368.0	[0..12]	[227..9]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDIWPTIER TTISASVPEA PANFDEKPPF NRTINVYPLT NYTFGTKDAQ AEKDKSVPER  60
   61 FKRMKDEYEV MGMRRSVEAV LIVHEHSLPH ILLLQIGTTF YKLPGGELEL GEDEISGVTR 120
  121 LLNETLGRTD GETNEWTIED EIGNWWRPNF DPPRYPYIPA HVTKPKEHTK LLLVQLPSKS 180
  181 TFCVPKNFKL VAAPLFELYD NAAAYGPLIS SLPTTLSRFN FIFNDSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	99.0
Match:	2cl3A
Description:	No description for 2cl3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits