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View Structure Prediction Details

Protein: CE10238
Organism: Caenorhabditis elegans
Length: 168 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10238.

Description E-value Query
Range
Subject
Range
gi|187021586, gi... - gi|39583819|emb|CAE74892.1| Hypothetical protein CBG22757 [Caenorhabditis briggsae], gi|187021586|em...
gi|157771438 - gi|157771438|ref|XP_001677539.1| Hypothetical protein CBG22757 [Caenorhabditis briggsae AF16]
170.0 [0..5] [168..9]
CE17393 - status:Partially_confirmed UniProt:O62055 protein_id:CAB03861.1
158.0 [0..13] [167..1118]
gi|55245300, gi|... - gi|58378121|ref|XP_308260.2| ENSANGP00000009343 [Anopheles gambiae str. PEST], gi|55245300|gb|EAA039...
146.0 [0..14] [166..693]

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Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKIIRIIL VNVESTPCTF VTNGQQITYG VRGNTIHFRV VLTGIPPTGS GWTAIGFGNS  60
   61 MFSGLDVIVV RVLNGRVIVT DEFVRGFQSP VPDRQNNVQV YGLRYENGVV VASFSRSVFS 120
  121 TEQMDANLSG CSPWKFSVGL NRMSPQGHLF HHSQTPFHRV VCINQCTV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.36
Match: 1d7cA
Description: Cytochrome domain of cellobiose dehydrogenase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle