YRC Public Data Repository - Protein Structure Prediction

Protein:	CE10066
Organism:	Caenorhabditis elegans
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE10066.

Description	E-value	Query Range	Subject Range
gi\|157755717 - gi\|157755717\|ref\|XP_001670202.1\| Hypothetical protein CBG06177 [Caenorhabditis briggsae AF16] gi\|39593840, gi\|... - gi\|39593840\|emb\|CAE62133.1\| Hypothetical protein CBG06177 [Caenorhabditis briggsae], gi\|187034405\|em...	295.0	[0..1]	[284..1]
gi\|187028090, gi... - gi\|39598084\|emb\|CAE68776.1\| Hypothetical protein CBG14718 [Caenorhabditis briggsae], gi\|187028090\|em... CE31242 - status:Partially_confirmed UniProt:Q23042 protein_id:AAB04595.2 gi\|157769867 - gi\|157769867\|ref\|XP_001676754.1\| Hypothetical protein CBG14718 [Caenorhabditis briggsae AF16]	283.0	[0..6]	[283..7]
ARCA_BACCN - Arginine deiminase OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=...	258.0	[0..9]	[283..101]
gi\|75908490, gi\|... - gi\|75908490\|ref\|YP_322786.1\| hypothetical protein Ava_2273 [Anabaena variabilis ATCC 29413], gi\|7570...	258.0	[0..15]	[283..6]
gi\|206737456, gi... - gi\|206968536\|ref\|ZP_03229492.1\| arginine deiminase [Bacillus cereus AH1134], gi\|206737456\|gb\|EDZ5460... ARCA_BACC4 - Arginine deiminase OS=Bacillus cereus (strain B4264) GN=arcA PE=3 SV=1 ARCA_BACC2 - Arginine deiminase OS=Bacillus cereus (strain G9842) GN=arcA PE=3 SV=1 gi\|228899081, gi... - gi\|228899081\|ref\|ZP_04063353.1\| Arginine deiminase [Bacillus thuringiensis IBL 4222], gi\|228860522\|g... gi\|228937650, gi... - gi\|228937650\|ref\|ZP_04100287.1\| Arginine deiminase [Bacillus thuringiensis serovar berliner ATCC 107... gi\|228950915, gi... - gi\|228950915\|ref\|ZP_04113037.1\| Arginine deiminase [Bacillus thuringiensis serovar kurstaki str. T03... gi\|228802862, gi... - gi\|228956821\|ref\|ZP_04118606.1\| Arginine deiminase [Bacillus thuringiensis serovar pakistani str. T1... gi\|228789126, gi... - gi\|228970539\|ref\|ZP_04131189.1\| Arginine deiminase [Bacillus thuringiensis serovar thuringiensis str... gi\|228782557, gi... - gi\|228977109\|ref\|ZP_04137510.1\| Arginine deiminase [Bacillus thuringiensis Bt407], gi\|228782557\|gb\|E... gi\|228727051, gi... - gi\|229042260\|ref\|ZP_04190012.1\| Arginine deiminase [Bacillus cereus AH676], gi\|228727051\|gb\|EEL78256... gi\|228714926, gi... - gi\|229068112\|ref\|ZP_04201419.1\| Arginine deiminase [Bacillus cereus F65185], gi\|228714926\|gb\|EEL6679... gi\|228675429, gi... - gi\|229108029\|ref\|ZP_04237655.1\| Arginine deiminase [Bacillus cereus Rock1-15], gi\|228675429\|gb\|EEL30... gi\|228657514, gi... - gi\|229125856\|ref\|ZP_04254881.1\| Arginine deiminase [Bacillus cereus BDRD-Cer4], gi\|228657514\|gb\|EEL1... gi\|229143149, gi... - gi\|229143149\|ref\|ZP_04271581.1\| Arginine deiminase [Bacillus cereus BDRD-ST24], gi\|228640230\|gb\|EEK9... gi\|228606424, gi... - gi\|229176949\|ref\|ZP_04304344.1\| Arginine deiminase [Bacillus cereus 172560W], gi\|228606424\|gb\|EEK638... gi\|228594817, gi... - gi\|229188628\|ref\|ZP_04315667.1\| Arginine deiminase [Bacillus cereus ATCC 10876], gi\|228594817\|gb\|EEK... gi\|75759587, gi\|... - gi\|75759587\|ref\|ZP_00739674.1\| Arginine deiminase [Bacillus thuringiensis serovar israelensis ATCC 3... ARCA_BACCR - Arginine deiminase OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 93...	257.0	[0..6]	[283..98]
ARCA_BACC1 - Arginine deiminase OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=arcA PE=3 SV=1	257.0	[0..6]	[283..98]
ARCA_BACHK - Arginine deiminase OS=Bacillus thuringiensis subsp. konkukian GN=arcA PE=3 SV=1 gi\|195992622, gi... - gi\|196034579\|ref\|ZP_03101987.1\| arginine deiminase [Bacillus cereus W], gi\|195992622\|gb\|EDX56582.1\| ... ARCA_BACC0 - Arginine deiminase OS=Bacillus cereus (strain AH820) GN=arcA PE=3 SV=1 gi\|228913109, gi... - gi\|228913109\|ref\|ZP_04076748.1\| Arginine deiminase [Bacillus thuringiensis serovar pulsiensis BGSC 4... ARCA_BACHK - Arginine deiminase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=arcA PE=3 SV=1 gi\|228944169, gi... - gi\|228944169\|ref\|ZP_04106548.1\| Arginine deiminase [Bacillus thuringiensis serovar monterrey BGSC 4A... gi\|229120021, gi... - gi\|229120021\|ref\|ZP_04249276.1\| Arginine deiminase [Bacillus cereus 95/8201], gi\|228663487\|gb\|EEL190... gi\|228925616, gi... - gi\|228925616\|ref\|ZP_04088705.1\| Arginine deiminase [Bacillus thuringiensis serovar pondicheriensis B... gi\|228827843, gi... - gi\|228931863\|ref\|ZP_04094759.1\| Arginine deiminase [Bacillus thuringiensis serovar andalousiensis BG...	257.0	[0..6]	[283..98]
gi\|22294228, gi\|... - gi\|22298050\|ref\|NP_681297.1\| hypothetical protein tll0507 [Thermosynechococcus elongatus BP-1], gi\|2...	253.0	[0..15]	[283..6]
gi\|186682737, gi... - gi\|23128891\|ref\|ZP_00110729.1\| COG1915: Uncharacterized conserved protein [Nostoc punctiforme PCC 73...	252.0	[0..15]	[283..6]
gi\|67852781, gi\|... - gi\|67925366\|ref\|ZP_00518717.1\| Conserved hypothetical protein 300 [Crocosphaera watsonii WH 8501], g...	251.0	[0..15]	[283..6]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKIVNSAMM GVAKRIMMCR PTHFKVDYSI NPWMDEKIQA DFEKATKQWD TLKSTIEKCG  60
   61 AEVVVMESED ARDYPDIVFC ANAGILRGNK IYLSHFAFPE RYGEHVFYKR FFDKLGYQTS 120
  121 FNHKIIHEGA GDALWCGNGM NILVSGVGPR SDVQACQDIK RKLKLNSDDT FYVVAARLVD 180
  181 PRFYHVDTCF CPLDEDLAMA YMPAFDSVSQ NNIRNYTDLL PVPEKDARRF VCNSVVIGKN 240
  241 VIVHHGSDTT FKLLEQHGFQ VHPIDMSEFM KAGGSAKCCT LRLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.39794
Match:	1jdwA
Description:	CRYSTAL STRUCTURE AND MECHANISM OF L-ARGININE: GLYCINE AMIDINOTRANSFERASE: A MITOCHONDRIAL ENZYME INVOLVED IN CREATINE BIOSYNTHESIS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.123492416969748	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: