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View Structure Prediction Details

Protein: CE09968
Organism: Caenorhabditis elegans
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09968.

Description E-value Query
Range
Subject
Range
gi|187029728, gi... - gi|39589544|emb|CAE66779.1| Hypothetical protein CBG12136 [Caenorhabditis briggsae], gi|187029728|em...
gi|157761911 - gi|157761911|ref|XP_001673298.1| Hypothetical protein CBG12136 [Caenorhabditis briggsae AF16]
383.0 [0..1] [260..1]
CE36841 - status:Predicted UniProt:O16623 protein_id:AAB66091.3
337.0 [0..22] [260..233]

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Predicted Domain #1
Region A:
Residues: [1-275]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFLILAML IEDIVTIKCN CLGSMGEFCD NGFCETTSYC MTSWVSINGQ ITAQDCLTTR  60
   61 TDLSDRQCQT NRKGLVSCVC STDMCNVDTF SIPTDIVLTA PPTIKCYNKF VDDDNFCFGQ 120
  121 FCRYSRQLVP NDFGDVQISS FFPERGCSDL EYNHDLASMN VCYTNDEMIV CQCNTEFCNK 180
  181 DQPFDVPMGN LLCYYNSNGK PGNIPGMKYC RGHLCYVHTN YDIISRGCIN VSDGGPEELK 240
  241 KKGGYLLYRF CDEDLCNGEI TADPVVNVEG SGNLS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.19
Match: 1ywhA
Description: crystal structure of urokinase plasminogen activator receptor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
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