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View Structure Prediction Details

Protein: CE09962
Organism: Caenorhabditis elegans
Length: 576 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09962.

Description E-value Query
Range
Subject
Range
fbxb-11 - status:Partially_confirmed UniProt:O16745 protein_id:AAB66215.1
357.0 [0..16] [548..2]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVDSICQNS NSDGFIPFPL LRLPLKTLKS VLLEMGPIER TIFSMLSDKT KDYTRTLCIF  60
   61 KGFHLSVNVS DSLMCDFTIN GNDYYFFSFK NGEVIVRKRN QENITFTAPP FDERSWLDHF 120
  121 FHIFNPSAIY LMFQYYNRKF DEPQFQIVQE CLKGQKIGYL FIGLTSDPEM KHIVSILNAF 180
  181 LPVDNVYVNT NQN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQLNSNQLST LRQIMPWNFK DLTITVNIPL NDLLLLNCVS LKIRSKQLTE KDLNLFLKYW  60
   61 IAGLKPELEY LNFVGNGPSL NQQNVLEGIP YQLGPVEREF ELYQM

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 27.431798
Match: PF07735.8
Description: No description for PF07735.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [299-341]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTEFGGIDIQ MAGGAKATLV FCPRNAQFTV TLHNSNPSVF MSG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [342-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPSLCKKTFK TFQFAYKFIK DLLLSYHTYL FLAIEAVQCL CFIHFAYPEH KTPQAALSEF  60
   61 FADPLQIVGT ILLAGVGAFL LDRLFFNRKQ YTIRSFCAKR YLMATAMISL AILLPVHSII 120
  121 GLYCDWTENI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [472-576]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVIQFIAG YLVFNLVDQL YELHAPVYYE LSENTKITTA QKASMVLFLV ISEIFYIGLS  60
   61 FLDLDPLADE YVASGFFYTT RFICPIINIL AIPIIWPSWL ITRKN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle