YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-15
Organism:	Caenorhabditis elegans
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-15.

Description	E-value	Query Range	Subject Range
gi\|55613939 - gi\|55613939\|ref\|XP_515900.1\| PREDICTED: similar to insulinoma protein (rig) [Pan troglodytes]	234.0	[0..8]	[151..2]
gi\|125557476 - gi\|125557476\|gb\|EAZ03012.1\| hypothetical protein OsI_25153 [Oryza sativa Indica Group] RS15_ORYSA - 40S ribosomal protein S15 - Oryza sativa (Rice) RS15_ORYSJ - 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2	233.0	[0..1]	[151..1]
gi\|192910788 - gi\|192910788\|gb\|ACF06502.1\| 40S ribosomal protein S15 [Elaeis guineensis] RS15_ELAOL - 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1	230.0	[0..1]	[151..1]
gi\|116793646, gi... - gi\|224284325\|gb\|ACN39898.1\| unknown [Picea sitchensis], gi\|116793646\|gb\|ABK26826.1\| unknown [Picea s... RS15_PICMA - 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1	226.0	[0..1]	[151..1]
gi\|61654730 - gi\|61654730\|gb\|AAX48891.1\| S15 [Suberites domuncula]	226.0	[0..1]	[151..1]
gi\|70909557 - gi\|70909557\|emb\|CAJ17200.1\| ribosomal protein S15e [Georissus sp. APV-2005]	223.0	[0..6]	[151..3]
gi\|82621162, gi\|... - gi\|82621162\|gb\|ABB86269.1\| 40S ribosomal protein S15-like [Solanum tuberosum], gi\|82621138\|gb\|ABB862...	222.0	[0..1]	[151..1]
gi\|70909559 - gi\|70909559\|emb\|CAJ17201.1\| ribosomal protein S15e [Micromalthus debilis]	221.0	[0..1]	[151..1]
gi\|70909561 - gi\|70909561\|emb\|CAJ17202.1\| ribosomal protein S15e [Scarabaeus laticollis]	221.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQDDAHLA ELKKKRTFRK FMYRGVDLDQ LLDMSREQFT KLLPCRMRRR LDRGLKRKHL  60
   61 ALIAKVQKAK KAAGVLEKPA TVKTHLRDMI ILPELVGGVI GIYNGKVFNQ TEIKPEMIGF 120
  121 YLGEFAISYK PVKHGRPGIG ATHSSRFIPL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1s1hS
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits