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View Structure Prediction Details

Protein: CE09937
Organism: Caenorhabditis elegans
Length: 471 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09937.

Description E-value Query
Range
Subject
Range
CE16301 - status:Partially_confirmed UniProt:O17982 protein_id:CAB05787.1
363.0 [0..1] [471..1]

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Predicted Domain #1
Region A:
Residues: [1-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDTELHVIF NQPDEVFHPG KPISGRVVLS TTKEKYKARA VNIKILGLAH TSWTDTERVR  60
   61 KVNAEGKETY ETKIVNYSAN VNYLDYSLLL WASSDGSNEL AAGEYAWPFS YTLPINVPPS 120
  121 FEGKYGYLRY SVTAEIDRPW RVDKDKKRCI TVSPLIDLNV IPHALTQIND QASENLGCCC 180
  181 FTKGYLELRV NIPKTGFVPG ETVPMNIHIL NHSSVPVTKV KAKIIQQCKF IAYRNGTTVT 240
  241 YDGGYETSTS GMLQETQHDT RTVVKQGLEM KVAPRNEHKF AMELRLPSVT PTINQFSPVI 300
  301 TVEYIVQFHV ETSTTCGGNV DCEMSILIGT VPISKYLPPA YYPQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.522879
Match: 1jsyA
Description: Arrestin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.31731162588602 bayes_pls_golite062009
protein binding 1.27021881529494 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [345-471]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPNLPPSQPT PIGGGVAPAG VAPAGVVPPP GYGFLPMTDG TDNGAGDTPY PVGPPYPSDV  60
   61 PAPYPSGDEP KDGTVVVPSA PPLSYEESMY GTEGTELNTD ENAQPFAPKY PVFNDLPVYN 120
  121 PTAPPPE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.39
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle