| Protein: | vpr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 245 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vpr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..1] | [245..1] |
|
|
236.0 | [0..1] | [243..1] |
|
|
234.0 | [0..1] | [243..8] |
|
|
232.0 | [0..1] | [243..1] |
|
|
229.0 | [0..1] | [243..8] |
|
Region A: Residues: [1-137] |
1 11 21 31 41 51
| | | | | |
1 MSEKHSLLQV TPNRELVFTG PFSDVVTSHM TLKNTSTNPV CFKVKTTAPK QYCVRPNSGL 60
61 LKSGDSKQIT VMLQPLEGIP SDAGRHKFMV QSCVAPSEDL PDLESVWKII DPAELTYSKL 120
121 MVTFVDKRDP ASGDDTK
|
| Detection Method: |  |
| Confidence: | 36.39794 |
| Match: | 2criA |
| Description: | Solution structure of the MSP domain of mouse VAMP-associated proteinA |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [138-245] |
1 11 21 31 41 51
| | | | | |
1 TFAVRNEDSF ASSGQAQELG SSYSGTPSHD GTVNSLRKSL KSTVDEKEEL QKKVHGLEQE 60
61 IEVMLKKNRK LQQSHSDGAL VDGAYPTLQI FLIAVAALLI GLIVGRLF
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
