YRC Public Data Repository - Protein Structure Prediction

Protein:	mdt-31
Organism:	Caenorhabditis elegans
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdt-31.

Description	E-value	Query Range	Subject Range
gi\|187029533, gi... - gi\|39589769\|emb\|CAE67004.1\| Hypothetical protein CBG12403 [Caenorhabditis briggsae], gi\|187029533\|em... gi\|157746621 - gi\|157746621\|ref\|XP_001668406.1\| Hypothetical protein CBG12403 [Caenorhabditis briggsae AF16]	197.0	[0..1]	[144..3]
gi\|220944342, gi... - gi\|220954132\|gb\|ACL89609.1\| MED31-PA [synthetic construct], gi\|220944342\|gb\|ACL84714.1\| MED31-PA [sy... FBpp0293855, MED... - The gene Mediator complex subunit 31 is referred to in FlyBase by the symbol Dmel\MED31 (CG1057, FBg...	188.0	[0..1]	[108..12]
MED31_AEDAE - Mediator of RNA polymerase II transcription subunit 31 OS=Aedes aegypti GN=MED31 PE=3 SV=1	185.0	[0..1]	[111..13]
gi\|55246244, gi\|... - gi\|58376136\|ref\|XP_307924.2\| ENSANGP00000021911 [Anopheles gambiae str. PEST], gi\|55246244\|gb\|EAA038...	180.0	[0..9]	[111..1]
gi\|72040230, gi\|... - gi\|72040230\|ref\|XP_794567.1\| PREDICTED: similar to CGI-125 protein [Strongylocentrotus purpuratus], ...	178.0	[0..1]	[108..17]
gi\|91084217 - gi\|91084217\|ref\|XP_968682.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	178.0	[0..2]	[108..14]
MED31_TAESO - Mediator of RNA polymerase II transcription subunit 31 OS=Taenia solium GN=Ts24233 PE=2 SV=1	177.0	[0..3]	[105..23]
gi\|48122204 - gi\|48122204\|ref\|XP_393244.1\| PREDICTED: similar to Mediator of RNA polymerase II transcription subun...	177.0	[0..2]	[131..26]

Back

Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESVESEKTR FEVECEFVQA LANPNYLNFL AQRGYFKEEY FVNYLKYLLY WKDPQYARCL  60
   61 KFPQCLHMLE ALQSQQFRDS MAYGPSAKFV EDQVVLQWQF YLRKRHRLCM MPDEGQELEE 120
  121 SEDEADIRQK DTEDEDDEET MKKPDADTAE KNSTTSTVSK KEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.744727
Match:	PF05669.3
Description:	No description for PF05669.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits