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View Structure Prediction Details

Protein: tbc-3
Organism: Caenorhabditis elegans
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tbc-3.

Description E-value Query
Range
Subject
Range
gi|39585768, gi|... - gi|39585768|emb|CAE59970.1| Hypothetical protein CBG03461 [Caenorhabditis briggsae], gi|187036678|em...
gi|157757023 - gi|157757023|ref|XP_001670855.1| Hypothetical protein CBG03461 [Caenorhabditis briggsae AF16]
371.0 [0..1] [495..1]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRWSAGSTP GSVKPVYGAR YPPLHHASPT KGVEIPGRMN KFQDYENSVS DAWDTRVKVD  60
   61 ETLASASAAK VLAAHAAGKT HRDEEIMPPV SAAPTKNSRQ QALQRLAIQK EPLPSSVSST 120
  121 PQTANPIYPK LPEISDQPRS AVPMASAPPH 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [151-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGDRDQTRFA RLRRLFSNGK SSGKNSPPVD VDLEKLREDC WMGIPHKLRP QAWRLLSGYL  60
   61 PTNAERREVT LQCKRDEYWH YVEQYFHSRF DDQNADTFRQ INIDIPRMCP LIPLFQQKMV 120
  121 QEMFERILYI WAIRHPASGY VQGINDLVTP FFVVFLSEFI PQDVEVGSFD VSQLPLEQCQ 180
  181 LIEADSFWCV SSLLDSIQDN YTFAQPGIQR KVLQLRHLMS RVDRPLHKHL ESNGIEYLQF 240
  241 AFRWMNNLLM REIPLRATIR LWDTYLSEPD GFMQFHNYVC AAFLRTWSKQ LQAEKDFQGV 300
  301 MILLQNLPTQ SWGDREICEL TADAFSLQSV FDGARRHLSA QAASP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.522879
Match: 2qfzA
Description: No description for 2qfzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle