YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09746
Organism:	Caenorhabditis elegans
Length:	150 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09746.

Description	E-value	Query Range	Subject Range
gi\|28277750, gi\|... - gi\|47085789\|ref\|NP_998232.1\| dual specificity phosphatase 1 [Danio rerio], gi\|28277750\|gb\|AAH45494.1...	128.0	[0..3]	[147..189]
gi\|50761732 - gi\|50761732\|ref\|XP_429156.1\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, D is...	125.0	[0..4]	[134..1288]
DUS1A_XENLA - Dual specificity protein phosphatase 1-A OS=Xenopus laevis GN=dusp1-a PE=1 SV=1	125.0	[0..3]	[145..189]
gi\|49257734, gi\|... - gi\|53749716\|ref\|NP_001005450.1\| dual specificity phosphatase 1 [Xenopus tropicalis], gi\|49257734\|gb\|...	125.0	[0..3]	[145..189]
gi\|47222971 - gi\|47222971\|emb\|CAF99127.1\| unnamed protein product [Tetraodon nigroviridis]	124.0	[0..3]	[147..99]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFRSMKDEL IQKENVGGVV CCTEEFELKA AMNAMREVDW KNEGVEFFAV PMKDFTGTAP  60
   61 RAEINEAVEF IESVASKGKT VYVHCKAGRT RSATVATCYL MKSRNWMSNV AWEFLKDKRH 120
  121 QVLLRNAHWR TVNEYRRFLD SNSSSTGSSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2f6fA
Description:	The structure of the S295F mutant of human PTP1B
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits