YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09709
Organism:	Caenorhabditis elegans
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09709.

Description	E-value	Query Range	Subject Range
gi\|71916302, gi\|... - gi\|72162570\|ref\|YP_290227.1\| nicotinic acid mononucleotide adenylyltransferase [Thermobifida fusca Y...	198.0	[0..2]	[222..16]
gi\|85667579 - gi\|85667579\|ref\|ZP_01029796.1\| hypothetical protein Badol_01000066 [Bifidobacterium adolescentis]	196.0	[0..4]	[221..58]
gi\|89318320, gi\|... - gi\|89341599\|ref\|ZP_01193842.1\| Cytidyltransferase-related:Probable nicotinate-nucleotide adenylyltra...	195.0	[0..2]	[221..49]
gi\|88930762, gi\|... - gi\|88930762\|ref\|ZP_01136457.1\| Cytidyltransferase-related:Probable nicotinate-nucleotide adenylyltra...	194.0	[0..4]	[222..8]
gi\|110817837, gi... - gi\|111018307\|ref\|YP_701279.1\| nicotinic acid mononucleotide adenylyltransferase [Rhodococcus jostii ...	193.0	[0..2]	[221..10]
NADD_MOOTA - Probable nicotinate-nucleotide adenylyltransferase OS=Moorella thermoacetica (strain ATCC 39073) GN=...	192.0	[0..4]	[221..9]
gi\|21325123, gi\|... - gi\|62391195\|ref\|YP_226597.1\| nicotinic acid mononucleotide adenylyltransferase [Corynebacterium glut...	192.0	[0..4]	[221..18]
gi\|48825491 - ref\|ZP_00286739.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Enterococcus faecium] gi\|69245738, gi\|... - gi\|69245738\|ref\|ZP_00603604.1\| Cytidyltransferase-related:Probable nicotinate-nucleotide adenylyltra... gi\|293571010\|ref... - nicotinate (nicotinamide) nucleotide adenylyltransferase [Enterococcus faecium E980]	192.0	[0..2]	[221..26]
gi\|84498612, gi\|... - gi\|84498612\|ref\|ZP_00997375.1\| nicotinate-nucleotide adenyltransferase [Janibacter sp. HTCC2649], gi...	191.0	[0..8]	[220..1]

Back

Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVALLAVG SFNPPTIAHL RMLEVARSHL ETINTQVVEG IMSPVADSYN NKPTLIKSNF  60
   61 RIQMVRAATK SSDWIRADDW ECTRTTWTRT IDVLRHHREL VQEKFGSDVG MMLVVGGDVV 120
  121 DSFTRILPDG SNLWNSSDIR TIITEFGLIV LSREGSNPLN TIQSMPAISE FCDRIIQVKD 180
  181 EVCPSGVSST RLRAAIMNKK SIKYSTPDEV INFIRENNLY QKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1nupA
Description:	Cytosolic NMN/NAMN adenylyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nicotinate-nucleotide adenylyltransferase activity	2.94996967804011	bayes_pls_golite062009
nicotinamide-nucleotide adenylyltransferase activity	2.8149071156304	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	2.54008423253828	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	2.54008423253828	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	2.52910114154477	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
ligase activity	1.92894388839884	bayes_pls_golite062009
binding	1.11291710031577	bayes_pls_golite062009
adenylyltransferase activity	1.08055019963499	bayes_pls_golite062009
nucleic acid binding	0.623161608923414	bayes_pls_golite062009
nucleotidyltransferase activity	0.564359271862248	bayes_pls_golite062009
pantetheine-phosphate adenylyltransferase activity	0.454904507512502	bayes_pls_golite062009
pantoate-beta-alanine ligase activity	0.282286652169846	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: