YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09669
Organism:	Caenorhabditis elegans
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09669.

Description	E-value	Query Range	Subject Range
gi\|39581043, gi\|... - gi\|39581043\|emb\|CAE57345.1\| Hypothetical protein CBG00285 [Caenorhabditis briggsae], gi\|187039187\|em... gi\|157744663 - gi\|157744663\|ref\|XP_001667428.1\| Hypothetical protein CBG00285 [Caenorhabditis briggsae AF16]	204.0	[0..1]	[226..1]
gi\|86821461, gi\|... - gi\|86821461\|gb\|AAI05385.1\| Dual specificity phosphatase 1 [Bos taurus], gi\|114050891\|ref\|NP_00103991...	190.0	[0..2]	[223..162]
gi\|73953410 - gi\|73953410\|ref\|XP_546235.2\| PREDICTED: similar to Dual specificity protein phosphatase 1 (MAP kinas...	189.0	[0..2]	[223..162]
gi\|114603388, gi... - gi\|114603390\|ref\|XP_527120.2\| PREDICTED: dual specificity phosphatase 1 isoform 2 [Pan troglodytes],... gi\|208966164 - gi\|208966164\|dbj\|BAG73096.1\| dual specificity phosphatase 1 [synthetic construct] DUSP1 - dual specificity phosphatase 1	189.0	[0..2]	[223..162]
gi\|109079769 - gi\|109079769\|ref\|XP_001096004.1\| PREDICTED: dual specificity phosphatase 1 [Macaca mulatta]	189.0	[0..2]	[223..162]
gi\|60654361 - gi\|60654361\|gb\|AAX29871.1\| dual specificity phosphatase 1 [synthetic construct]	189.0	[0..2]	[223..162]
gi\|154759232, gi... - gi\|50764356\|ref\|XP_422941.1\| PREDICTED: similar to MAP kinase phosphatase-1 [Gallus gallus], gi\|1547...	186.0	[0..2]	[223..164]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSFRVNPE YAAMSEIVPG LFICGVSALS KDEMKKHKIT HIINATTEVP NLRSLGDIQR  60
   61 TKLWLEDTPQ TYIYPHLELQ SDQIQALIAD GGKVLVHCVA GVSRSASICL AFLLKYRCRN 120
  121 LREAYHLMKS KRSMVRPNLG FWRQLIAYEQ NVKENAGSVR LVRDEAQPEQ LLPDVYLNIA 180
  181 IPARPASPEQ DPNMIPDEPR ERRNSGFKSK FRPVLEPVME MAEAVC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.09691
Match:	2g6zA
Description:	No description for 2g6zA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits