YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09644
Organism:	Caenorhabditis elegans
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09644.

Description	E-value	Query Range	Subject Range
gi\|39581580, gi\|... - gi\|39581580\|emb\|CAE58365.1\| Hypothetical protein CBG01490 [Caenorhabditis briggsae], gi\|187038188\|em... gi\|157760157 - gi\|157760157\|ref\|XP_001672421.1\| Hypothetical protein CBG01490 [Caenorhabditis briggsae AF16]	148.0	[0..3]	[99..1378]
gi\|157829621, gi... - gi\|5107800\|pdb\|1914\| Chain , Signal Recognition Particle Alu Rna Binding Heterodimer, Srp914, gi\|1...	135.0	[0..8]	[98..23]
gi\|109080610 - gi\|109080610\|ref\|XP_001093052.1\| PREDICTED: similar to signal recognition particle 14kDa (homologous...	131.0	[0..8]	[102..4]
gi\|31543653, gi\|... - gi\|31543653\|ref\|NP_003125.2\| signal recognition particle 14kDa (homologous Alu RNA binding protein) ...	131.0	[0..8]	[105..4]
gi\|55727961 - gi\|55727961\|emb\|CAH90733.1\| hypothetical protein [Pongo abelii] SRP14_PONAB - Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1 SRP14 - signal recognition particle 14kDa (homologous Alu RNA binding protein) gi\|114656316, gi... - gi\|114656316\|ref\|XP_001140418.1\| PREDICTED: hypothetical protein LOC737573 isoform 2 [Pan troglodyte...	131.0	[0..8]	[105..4]
gi\|109487435 - gi\|109487435\|ref\|XP_001063536.1\| PREDICTED: similar to Signal recognition particle 14 kDa protein (S...	129.0	[0..8]	[98..114]
SRP14_CANLF - Signal recognition particle 14 kDa protein OS=Canis lupus familiaris GN=SRP14 PE=1 SV=2	129.0	[0..8]	[98..4]

Back

Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVEQHIPN DQFLQKLTAF YRDSKIRGPK SVYVTMKPYD GRTKAMPKGS TFKEGDEISC  60
   61 IFRAKWGSKK IATEVKAKEV NKFHTQYSAI IVAQMVNLEK RKKTDDEKKK TGATKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits