YRC Public Data Repository - Protein Structure Prediction

Protein:	cup-2
Organism:	Caenorhabditis elegans
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cup-2.

Description	E-value	Query Range	Subject Range
gi\|50758070 - gi\|50758070\|ref\|XP_415746.1\| PREDICTED: similar to carcinoma related gene [Gallus gallus]	264.0	[0..3]	[244..127]
gi\|54639131, gi\|... - gi\|54639131\|gb\|EAL28533.1\| GA13336-PA [Drosophila pseudoobscura], gi\|125776769\|ref\|XP_001359387.1\| G...	234.0	[0..3]	[241..4]
gi\|114665974 - gi\|114665974\|ref\|XP_511992.2\| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes] ENSCJAT00000022013 - null gi\|168278134 - gi\|168278134\|dbj\|BAG11045.1\| derlin-2 [synthetic construct] gi\|109112945 - gi\|109112945\|ref\|XP_001101490.1\| PREDICTED: similar to Der1-like domain family, member 2 [Macaca mul... DERL2 - Der1-like domain family, member 2 gi\|73955289 - gi\|73955289\|ref\|XP_848354.1\| PREDICTED: similar to Der1-like domain family, member 2 isoform 1 [Cani... tr\|G1SMK6\|G1SMK6... - pep:novel chromosome:oryCun2:19:12909437:12922849:-1 gene:ENSOCUG00000004811 transcript:ENSOCUT00000... gi\|194675605 - gi\|194675605\|ref\|XP_001789969.1\| PREDICTED: Der1-like domain family, member 2 [Bos taurus] DERL2_PONAB - Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1 DERL2_PONPY - Derlin-2 - Pongo pygmaeus (Orangutan)	228.0	[0..6]	[244..9]
gi\|89269041, gi\|... - gi\|89269041\|emb\|CAJ81565.1\| Der1-like domain family, member 3derlin-3 [Xenopus tropicalis], gi\|62859...	228.0	[0..3]	[244..6]
gi\|66267283, gi\|... - gi\|66773149\|ref\|NP_001019566.1\| Der1-like domain family, member 2 [Danio rerio], gi\|66267283\|gb\|AAH9...	228.0	[0..3]	[244..6]
gi\|157746865 - gi\|157746865\|ref\|XP_001668528.1\| Hypothetical protein CBG02198 [Caenorhabditis briggsae AF16] gi\|39580763, gi\|... - gi\|39580763\|emb\|CAE58932.1\| Hypothetical protein CBG02198 [Caenorhabditis briggsae], gi\|187037618\|em...	228.0	[0..1]	[245..1]
DERL2_MOUSE - Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2 gi\|149053255, gi... - gi\|149053255\|gb\|EDM05072.1\| rCG34415, isoform CRA_c [Rattus norvegicus], gi\|109491204\|ref\|XP_0010799...	228.0	[0..6]	[244..9]
gi\|72015515, gi\|... - gi\|72015515\|ref\|XP_786599.1\| PREDICTED: similar to Der1-like domain family, member 2 [Strongylocentr...	225.0	[0..3]	[241..6]
gi\|109488353 - gi\|109488353\|ref\|XP_001079920.1\| PREDICTED: similar to Der1-like domain family, member 2 [Rattus nor...	224.0	[0..6]	[244..9]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLENFLLGI PIVTRYWFLA STIIPLLGRF GFINVQWMFL QWDLVVNKFQ FWRPLTALIY  60
   61 YPVTPQTGFH WLMMCYFLYN YSKALESETY RGRSADYLFM LIFNWFFCSG LCMALDIYFL 120
  121 LEPMVISVLY VWCQVNKDTI VSFWFGMRFP ARYLPWVLWG FNAVLRGGGT NELVGILVGH 180
  181 AYFFVALKYP DEYGVDLIST PEFLHRLIPD EDGGIHGQDG NIRGARQQPR GHQWPGGVGA 240
  241 RLGGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	2ic8A
Description:	No description for 2ic8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits