YRC Public Data Repository - Protein Structure Prediction

Protein:	crls-1
Organism:	Caenorhabditis elegans
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for crls-1.

Description	E-value	Query Range	Subject Range
gi\|47086177, gi\|... - gi\|47086177\|ref\|NP_998096.1\| cardiolipin synthase 1 [Danio rerio], gi\|45709380\|gb\|AAH67687.1\| Zgc:85...	167.0	[0..5]	[246..97]
crls-1 - status:Confirmed UniProt:O01916 protein_id:AAV58872.1	161.0	[0..25]	[246..1]
gi\|39586066, gi\|... - gi\|39586066\|emb\|CAE69142.1\| Hypothetical protein CBG15172 [Caenorhabditis briggsae], gi\|187027364\|em... gi\|157776946 - gi\|157776946\|ref\|XP_001666539.1\| hypothetical protein CBG15172 [Caenorhabditis briggsae AF16]	158.0	[0..19]	[246..10]
gi\|91087277 - gi\|91087277\|ref\|XP_975545.1\| PREDICTED: similar to cdp-diacylglycerol--glycerol-3-phosphate 3-phosph...	150.0	[0..36]	[246..98]
gi\|88181734, gi\|... - gi\|88181734\|gb\|EAQ89202.1\| hypothetical protein CHGG_05821 [Chaetomium globosum CBS 148.51], gi\|1161...	150.0	[0..28]	[246..106]
gi\|32403216, gi\|... - gi\|32403216\|ref\|XP_322221.1\| hypothetical protein [Neurospora crassa], gi\|28917240\|gb\|EAA26952.1\| hy... gi\|85078561 - gi\|85078561\|ref\|XP_956188.1\| hypothetical protein [Neurospora crassa OR74A]	149.0	[0..42]	[246..109]
gi\|220949906 - gi\|220949906\|gb\|ACL87496.1\| CG4774-PA [synthetic construct] CG4774-PA, CG477... - This gene is referred to in FlyBase by the symbol Dmel\CG4774 (CG4774, FBgn0039360). It is a protein...	148.0	[0..45]	[246..117]
gi\|157103941, gi... - gi\|157103941\|ref\|XP_001648191.1\| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase ...	146.0	[0..34]	[246..127]
gi\|91686555, gi\|... - gi\|91782601\|ref\|YP_557807.1\| CDP-diacylglycerol--serine O- phosphatidyltransferase [Burkholderia xen...	145.0	[0..20]	[241..14]

Back

Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVTSMFRGI ACRCELQLLL TPRRMLRNFS SLEQKQSPKI ESLPPEERGK YKVATIPNAI  60
   61 CTARIAATPL IGYLVVQHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.534	a.4.1	Homeodomain-like
View	Download	0.527	a.2.3	Chaperone J-domain
View	Download	0.491	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.439	d.58.11	EF-G/eEF-2 domains III and V
View	Download	0.432	f.17.1	F1F0 ATP synthase subunit C

Predicted Domain #2

Region A:
Residues: [80-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTPAFVLFTV AGATDLLDGF IARNVPGQKS LLGSVLDPVA DKLLISTMFI TMTYAGLIPL  60
   61 PLTSVVILRD ICLIGGGFYK RYQVMSPPYS LSRFFNPQVS SMQVVPTMMS KINTVLQITL 120
  121 VALSLSSPVF DFSTGANDVI VGLGCITGFT TIYSGLQYAS GKAIKKI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	23.769551
Match:	PF01066.12
Description:	No description for PF01066.12 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits