YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09564
Organism:	Caenorhabditis elegans
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09564.

Description	E-value	Query Range	Subject Range
gi\|109467069, gi... - gi\|62643982\|ref\|XP_578033.1\| PREDICTED: similar to TD and POZ domain containing 2 [Rattus norvegicus...	128.0	[0..2]	[127..185]
gi\|91077018 - gi\|91077018\|ref\|XP_966622.1\| PREDICTED: similar to CG9924-PC, isoform C [Tribolium castaneum]	128.0	[0..7]	[137..275]
gi\|55244234, gi\|... - gi\|58379439\|ref\|XP_309921.2\| ENSANGP00000015075 [Anopheles gambiae str. PEST], gi\|55244234\|gb\|EAA056...	127.0	[0..7]	[137..44]
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	127.0	[0..7]	[137..72]
TDPZ4_MOUSE - TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=1	127.0	[0..3]	[125..186]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFFDKVIR LNIGGKRFDT HKSTLMKFDG YFKKFLQTPG SSLVDPIFVD RSPTYFDIVL  60
   61 NFMRKGRADL PETLKDLKML LGEAEYYELT ELCDDCKREI SRLDIGIESE PFYEIIPEPS 120
  121 VVARNNNNTI PNNVVEVGS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.09691
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits