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View Structure Prediction Details

Protein: CE09396
Organism: Caenorhabditis elegans
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09396.

Description E-value Query
Range
Subject
Range
CE09395 - status:Partially_confirmed UniProt:Q93484 protein_id:CAB02933.1
354.0 [0..1] [222..1]
gi|157759457 - gi|157759457|ref|XP_001672072.1| Hypothetical protein CBG13526 [Caenorhabditis briggsae AF16]
gi|39587907, gi|... - gi|39587907|emb|CAE67926.1| Hypothetical protein CBG13526 [Caenorhabditis briggsae], gi|187028554|em...
228.0 [0..33] [195..1]

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Predicted Domain #1
Region A:
Residues: [1-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNCNARPAT FKPKNLPMEY PKKYAMYPTR RRMRASERRT YKRDCKNLLE SVAGENPFEG  60
   61 DEETANNYTE AIFSISIKAK VLKTYMDLIE SSINEECPVN GHIQLFCNEI NNLSHLYEVF 120
  121 FRKSIVSVDT RVEERKEIAR AAYRDIKNLT IIIYLNKERS KTLLQSVMMH TEFQTHQAEK 180
  181 LVEHYEATFS PILKEVLPDP NAPRIHRTPT RAQIIAFWEE VRREKESGTL GTPF

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Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle