YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09355
Organism:	Caenorhabditis elegans
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09355.

Description	E-value	Query Range	Subject Range
gi\|47228508 - gi\|47228508\|emb\|CAG05328.1\| unnamed protein product [Tetraodon nigroviridis]	165.0	[0..3]	[104..288]
gi\|32880117, gi\|... - gi\|60652983\|gb\|AAX29186.1\| mitochondrial creatine kinase 1 [synthetic construct], gi\|60652981\|gb\|AAX...	165.0	[0..3]	[104..289]
gi\|109080866 - gi\|109080866\|ref\|XP_001102013.1\| PREDICTED: similar to creatine kinase, mitochondrial 1B precursor [...	165.0	[0..3]	[104..639]
CKMT1A, CKMT1B - creatine kinase, mitochondrial 1A, creatine kinase, mitochondrial 1B gi\|124000391, gi... - gi\|60656059\|gb\|AAX32593.1\| mitochondrial creatine kinase 1 [synthetic construct], gi\|124000391\|gb\|AB...	165.0	[0..3]	[104..289]
KCRU_MOUSE - Creatine kinase U-type, mitochondrial OS=Mus musculus GN=Ckmt1 PE=1 SV=1	164.0	[0..3]	[104..290]
gi\|148222749, gi... - gi\|28175289\|gb\|AAH45123.1\| Ckmt1-prov protein [Xenopus laevis], gi\|148222749\|ref\|NP_001080463.1\| cre...	163.0	[0..3]	[105..290]
gi\|57108147 - gi\|57108147\|ref\|XP_535451.1\| PREDICTED: similar to creatine kinase, mitochondrial 1B precursor isofo...	163.0	[0..3]	[104..289]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIIQKLEVL ASNFQQSRYW PYITSLKSSV HIKLPKISAK DDFKKICSEM KLQIRGIHGE  60
   61 YSDLKEGIYD ISNKQRLGLT EYQAVRQMYD GLKKLIELWR KPPNKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1qk1A
Description:	Creatine kinase, N-domain; Creatine kinase, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits