YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09268
Organism:	Caenorhabditis elegans
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09268.

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	133.0	[0..1]	[138..247]
hsp-16.11 - heat shock protein HSP16-1 status:Partially_confirmed UniProt:P34696 protein_id:AAB04842.1	131.0	[0..1]	[147..1]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	129.0	[0..1]	[140..1]
gi\|157764426 - gi\|157764426\|ref\|XP_001674556.1\| Hypothetical protein CBG19186 [Caenorhabditis briggsae AF16] gi\|187024434, gi... - gi\|39594517\|emb\|CAE72095.1\| Hypothetical protein CBG19186 [Caenorhabditis briggsae], gi\|187024434\|em...	127.0	[0..1]	[147..1]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	126.0	[0..1]	[138..1]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	125.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSPFFNPK RDSQLGEMMR DMGGMQRRLM PISGTFNPMT DDSEIMNSND KFAVNLNVSN  60
   61 FKPEELKVNL EGRQLSIQGE HDVENEHGAS RKSFSRMILL PEDVDITSVA TNLSNDGKLC 120
  121 IEAPKLEGVC GRSVPVKEAS MDHHHIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.0
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits