YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09267
Organism:	Caenorhabditis elegans
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09267.

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	124.0	[0..1]	[139..247]
gi\|224545 - gi\|224545\|prf\|\|1107298A protein,small heat shock	123.0	[0..1]	[139..1]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	122.0	[0..1]	[139..1]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	122.0	[0..1]	[139..1]
CRYAA_LOXAF - Alpha-crystallin A chain OS=Loxodonta africana GN=CRYAA PE=1 SV=1	122.0	[0..2]	[147..13]
gi\|87240494 - gi\|87240494\|gb\|ABD32352.1\| Heat shock protein Hsp20 [Medicago truncatula]	121.0	[0..1]	[139..1]
CRYAA_PIG - Alpha-crystallin A chain OS=Sus scrofa GN=CRYAA PE=1 SV=1 gi\|229520, gi\|71441 - pir\|\|CYPGAA alpha-crystallin chain A - pig (tentative sequence), gi\|229520\|prf\|\|751000F crystallin ...	121.0	[0..2]	[147..13]
gi\|83701135 - gi\|83701135\|gb\|ABC41131.1\| 17.3 kDa class I heat shock protein [Arachis hypogaea]	121.0	[0..1]	[138..1]
CRYAA_PEDCA - Alpha-crystallin A chain OS=Pedetes capensis GN=CRYAA PE=1 SV=1 CRYAA_CAVPO - Alpha-crystallin A chain OS=Cavia porcellus GN=CRYAA PE=1 SV=1	121.0	[0..2]	[147..13]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNPFFDPR TLGEMVFGDN GRLDREYVPI SENNDDLSDC RNEIVDTHEK FSVNLNVPDV  60
   61 KPEELKINLE GRKLSIKAEH QEIENDNIST TQTYSKSIVL PEDVDVTHLS SNLSEDGKLL 120
  121 IEVPKVEAKK TNFFGFLSKF RCMPESQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.69897
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.636329168399534	bayes_pls_golite062009
protein binding	0.0247851905266481	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: