YRC Public Data Repository - Protein Structure Prediction

Protein:	CE09071
Organism:	Caenorhabditis elegans
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09071.

Description	E-value	Query Range	Subject Range
gi\|157762738 - gi\|157762738\|ref\|XP_001673711.1\| Hypothetical protein CBG23264 [Caenorhabditis briggsae AF16] gi\|39592076, gi\|... - gi\|39592076\|emb\|CAE75296.1\| Hypothetical protein CBG23264 [Caenorhabditis briggsae], gi\|187021155\|em...	143.0	[0..1]	[103..274]
CYB5_BOROF - Cytochrome b5 OS=Borago officinalis PE=2 SV=1	132.0	[0..4]	[99..3]
gi\|220948800, gi... - gi\|220958220\|gb\|ACL91653.1\| Cyt-b5-PB [synthetic construct], gi\|220948800\|gb\|ACL86943.1\| Cyt-b5-PB [... Cyt-b5-PB - The gene Cyt-b5 is referred to in FlyBase by the symbol Dmel\Cyt-b5 (CG2140, FBgn0033189). It is a p...	131.0	[0..1]	[98..1]
gi\|54636572, gi\|... - gi\|54636572\|gb\|EAL25975.1\| GA15264-PA [Drosophila pseudoobscura], gi\|125810204\|ref\|XP_001361397.1\| G...	130.0	[0..4]	[98..7]
CYB5_MUSDO - Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1	128.0	[0..1]	[99..1]
CYB5B_ARATH - Cytochrome b5 isoform B OS=Arabidopsis thaliana GN=CYTB5-B PE=1 SV=1	127.0	[0..4]	[95..6]
gi\|50844675 - gi\|50844675\|gb\|AAT84459.1\| cytochrome b5 isoform Cb5-B [Vernicia fordii]	127.0	[0..4]	[95..6]
gi\|125550542 - gi\|125550542\|gb\|EAY96251.1\| hypothetical protein OsI_18149 [Oryza sativa Indica Group] CYB5_ORYSJ - Cytochrome b5 OS=Oryza sativa subsp. japonica GN=Os05g0108800 PE=2 SV=2 CYB5_ORYSA - Cytochrome b5 - Oryza sativa (Rice)	126.0	[0..2]	[95..5]
gi\|42546925, gi\|... - gi\|46110511\|ref\|XP_382313.1\| hypothetical protein FG02137.1 [Gibberella zeae PH-1], gi\|42546925\|gb\|E...	126.0	[0..1]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSIITRSE VNMHCSEDDC WIIVGNYVYD VTKFVDLHPG GPEILLEFAG GDATDAFESV  60
   61 GHSMCARMML TKFKIGSLPE DERPDFIQAE YITHAKISLP MAH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1hkoA
Description:	Cytochrome b5
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits