YRC Public Data Repository - Protein Structure Prediction

Protein:	rps-10
Organism:	Caenorhabditis elegans
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rps-10.

Description	E-value	Query Range	Subject Range
gi\|114606978 - gi\|114606978\|ref\|XP_001171658.1\| PREDICTED: similar to ribosomal protein S10 isoform 3 [Pan troglody... tr\|A0A1W2PQS6\|A0... - IPI:IPI00978180.1\|REFSEQ:NP_001189399 Tax_Id=9606 Gene_Symbol=RPS10-NUDT3 RPS10-NUDT3 protein, Tax_I...	240.0	[0..1]	[137..1]
gi\|55665989 - gi\|55665989\|emb\|CAH73101.1\| ribosomal protein S10 [Homo sapiens]	234.0	[0..1]	[137..1]
gi\|73972594 - gi\|73972594\|ref\|XP_532112.2\| PREDICTED: similar to 40S ribosomal protein S10 [Canis familiaris]	233.0	[0..1]	[137..150]
gi\|187022134, gi... - gi\|39589491\|emb\|CAE74520.1\| Hypothetical protein CBG22274 [Caenorhabditis briggsae], gi\|187022134\|em... gi\|157745307 - gi\|157745307\|ref\|XP_001667750.1\| Hypothetical protein CBG22274 [Caenorhabditis briggsae AF16]	228.0	[0..1]	[149..1]
gi\|62652203, gi\|... - gi\|62652203\|ref\|XP_235190.2\| PREDICTED: similar to ribosomal protein S10 [Rattus norvegicus], gi\|109...	227.0	[0..1]	[146..1]
gi\|109096350 - gi\|109096350\|ref\|XP_001093979.1\| PREDICTED: similar to 40S ribosomal protein S10 [Macaca mulatta]	226.0	[0..1]	[148..1]
RS10_SPOFR - 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1	226.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIPKSHTKL IYEYLFNEGV TVAKKDFNAK THPNIEGVSN LEVIKTLKSL ASRELVKEQF  60
   61 AWRHYYWYLT DAGILYLREY LALPAEIVPA TIKTKPREIR VPHEDRAPRA AQGEKGDREA 120
  121 YRTEKVTEAG PGGAPVYRAG FGRGAPPPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.01
Match:	1ub9A
Description:	Structure of the transcriptional regulator homologue protein from Pyrococcus horikoshii OT3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits