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View Structure Prediction Details

Protein: ttr-44
Organism: Caenorhabditis elegans
Length: 156 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ttr-44.

Description E-value Query
Range
Subject
Range
gi|39592956, gi|... - gi|39592956|emb|CAE62570.1| Hypothetical protein CBG06683 [Caenorhabditis briggsae], gi|187034230|em...
215.0 [0..13] [153..14]
ttr-46 - Transthyretin-like family status:Confirmed UniProt:Q22285 protein_id:CAA98286.1
205.0 [0..2] [143..3]

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Predicted Domain #1
Region A:
Residues: [1-156]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLLLALFS LAMVQAMRDQ SIAVKGRLIC GDKPAANVRI KLWEEDSGPD PDDLLEAGYT  60
   61 DSNGEFQLSG GEAELTPIDP IFKVYHDCDD KYIPGHRKVK FLIPKSYITQ GKTPKKTFDL 120
  121 GVLNLETIFP KEERELIVSR KRRHHPKQYI NEEDSF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 72.49485
Match: PF01060.14
Description: No description for PF01060.14 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle