YRC Public Data Repository - Protein Structure Prediction

Protein:	ssp-19
Organism:	Caenorhabditis elegans
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ssp-19.

Description	E-value	Query Range	Subject Range
gi\|34810947 - gi\|34810947\|pdb\|1M1S\|A Chain A, Structure Of Wr4, A C.Elegans Msp Family Member	131.0	[0..3]	[108..11]
gi\|157762468 - gi\|157762468\|ref\|XP_001673576.1\| Hypothetical protein CBG23425 [Caenorhabditis briggsae AF16] gi\|39592211, gi\|... - gi\|39592211\|emb\|CAE75432.1\| Hypothetical protein CBG23425 [Caenorhabditis briggsae], gi\|187021020\|em...	130.0	[0..3]	[108..2]
gi\|33114624 - gi\|33114624\|gb\|AAP94885.1\| MFP1-beta [Ascaris suum]	126.0	[0..2]	[108..57]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTADPPAC TVPAAGVSST HKLVNGGAEK IVFKIKSSNN NEYRIAPVFG FVDPSGSKDV  60
   61 VITRTAGAPK EDKLVVHFAS APADATDAQA AFVAVAPAGT VTIPMSATA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1rowA
Description:	Structure of SSP-19, an MSP-domain protein like family member in Caenorhabditis elegans
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.653234420802729	bayes_pls_golite062009
protein binding	0.170808849690486	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: