YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08960
Organism:	Caenorhabditis elegans
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08960.

Description	E-value	Query Range	Subject Range
gi\|194210312 - gi\|194210312\|ref\|XP_001493064.2\| PREDICTED: kelch-like 20 (Drosophila) [Equus caballus] KLHL20 - kelch-like 20 (Drosophila) KLH20_RAT - Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1 gi\|73960600 - gi\|73960600\|ref\|XP_537188.2\| PREDICTED: similar to kelch-like 20 isoform 1 [Canis familiaris] gi\|114565500, gi... - gi\|114565500\|ref\|XP_514005.2\| PREDICTED: kelch-like 20 isoform 3 [Pan troglodytes], gi\|114565498\|ref... KLH20_BOVIN - Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3 ENSCJAT00000018058 - null	408.0	[0..6]	[427..180]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHEMNTKFY INLMLARFVI SAFSALKDSS ITSLGIPRHR QGIIGVEKMT NHIFSDSESD  60
   61 RESGASEFDY HSDSQSEETQ HPKAIEMRNQ FRNTTENLIQ TLQMFFGILS FELYEGKDNL 120
  121 KCITMIHDIT SLMEVADTKL KNYI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	2cn3A
Description:	No description for 2cn3A was found.

Predicted Domain #2

Region A:
Residues: [145-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTLNSKEQIF MVDDGVLNMD PILVADRKQN SREPLFIGYF KPDTMSFMPI GRLPNPKSHY  60
   61 AVVSSSTKVF IIGGMNNGTY LNRVEMFDKE KGIRVECTRL MHGRTRTSAC IHEDAIYAVG 120
  121 GYDATYMSSV EIYDIKTGGD WTTGPSLNNR RADASVVSFY GQLFVLGGFN GKDYEETIEK 180
  181 LSDSKDKFEV CGNMVGRAGF GACVFRGRIY VAGGWNTPCN TLKTFQSYDP LTNTWKDEPS 240
  241 MNTGRKYFKL HATNEAIYAI RGCSHDWDLI KETERFDPQT LTWATS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.522879
Match:	1x2jA
Description:	Structural basis for the defects of human lung cancer somatic mutations in the repression activity of Keap1 on Nrf2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits