YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08949
Organism:	Caenorhabditis elegans
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08949.

Description	E-value	Query Range	Subject Range
PFKFB2 - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 ENSPTRT00000003506 - null	205.0	[0..4]	[281..226]
F262_BOVIN - 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Bos taurus GN=PFKFB2 PE=1 SV=2	204.0	[0..4]	[281..227]
gi\|73960683 - gi\|73960683\|ref\|XP_537134.2\| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-biphosphata...	204.0	[0..4]	[281..228]
gi\|56403556 - gi\|56403556\|emb\|CAI29582.1\| hypothetical protein [Pongo abelii] F262_PONAB - 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Pongo abelii GN=PFKFB2 PE=2 SV=1	202.0	[0..4]	[281..226]
gi\|50760343 - gi\|50760343\|ref\|XP_417979.1\| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-biphosphata...	201.0	[0..4]	[278..206]
gi\|148707789, gi... - gi\|74145062\|dbj\|BAE27404.1\| unnamed protein product [Mus musculus], gi\|34147045\|ref\|NP_032851.2\| 6-p...	201.0	[0..4]	[281..228]
gi\|8307716, gi\|1... - gi\|8307722\|dbj\|BAA96498.1\| RH2K6 [Rattus norvegicus], gi\|8307716\|dbj\|BAA96495.1\| RH2K1 [Rattus norve...	201.0	[0..4]	[281..229]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDITTKSTK QTESLVCGEF KALGPAPYYV GDEIIVMRCA ETINEIFSDW TKRANLDENK  60
   61 YTPFDVNAPI ELPRRTDMLK SYNLDPPINE TGKIASKMIA RELCDRHAIP SVIFCSPDFA 120
  121 SVETAHLIKS YIGEKCGAIR IEPELSTLHK SAHVFFGPNH FTSLGYGIDE KNPLHAVSDG 180
  181 VSLSDLVNRI KRAFYELTSK VDNALIIVDS LSMMIISSLF HNVYIRNDSS VDLERLRSLA 240
  241 SFPSLSNFTA YRVGGQTGVK TYDLTSTCLR PLTFTGFSNE IDLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2axnA
Description:	Crystal structure of the human inducible form 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits