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View Structure Prediction Details

Protein: col-68
Organism: Caenorhabditis elegans
Length: 329 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-68.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
259.0 [0..58] [327..1459]

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Predicted Domain #1
Region A:
Residues: [1-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASESSHDDP KYEAQEADAM RKLAFFGIAI STVATLTAIM AVPMLYNYMQ HVQSALQSEV  60
   61 DFCRHRTNGL WDEYNKFESV AGVRRRIKRA TYQKSNGVTG RLAHRRRAVA RGASSYDGGF 120
  121 NEEVPVGGGG GGGACCSCGV GPPGPSGAPG TDGNPGNDGS PGNPGTPGQD AVGDESPTAA 180
  181 DFCFDCPTGP PGPPGKQGPK GPNGEPGAPG TPGGNALPGP PGPPGPQGPP GADGLPGNPG 240
  241 APGVPGQVIE VPGTPGPAGP PGPPGPIGPP GQPGAPGSSQ PGPQGPPGDP GIDGAPGNPG 300
  301 SPGEPGPPGQ PGAGGGCDHC PPPRTAPGY

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Detection Method: PSI-BLAST
Confidence: 28.39794
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle