| Protein: | CE08887 |
| Organism: | Caenorhabditis elegans |
| Length: | 589 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08887.
| Description | E-value | Query Range |
Subject Range |
|
|
481.0 | [0..3] | [585..951] |
|
Region A: Residues: [1-421] |
1 11 21 31 41 51
| | | | | |
1 MCFSALRERV FRLKNLPAGE IATPLRRCLS TFDITLLGVG HMIGAGIYVL TGSVVRNTAG 60
61 PSIILSFLLA GFASLLSALC YAEFGARFPK AGSAYTYTYV GVGELWAFVI GWNIILEHML 120
121 GAAAVARSWS GYLDSLLGNV ISNSTIARTG HLHEASSFFG DYPDLLAFLL IVLVAFFVAL 180
181 GSKVSTNFNS FLTILNIGIV VIVVFYGITF ADFSLWSGVD EKGNSRFFPY GVSGMFAGAA 240
241 SCFFAYIGFD GLATAGEEAK DPARSIPIAT FSSMTIVTLS YVLMSASLTL MIPYNMVHPT 300
301 AAFSDAFTMR GAEFASYAVS VGALFGMTTS LVGGMFALPR CVFSMADDGL LFSSLASVNP 360
361 KTQVPTQALL IFGFLTAIIA LLFDITTLVE FLSIGTLLAY SIVSACVIVL RYQPAYNVDE 420
421 G
|
| Detection Method: |  |
| Confidence: | 1.54 |
| Match: | 2a65A |
| Description: | Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [422-494] |
1 11 21 31 41 51
| | | | | |
1 QFDNGGKLRF SIPFCGFLDK LQPGHSIYYG MSVMIASMFF SGLGFSSGYL YGTVLCQIFL 60
61 LVNIALIILS FLF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [495-589] |
1 11 21 31 41 51
| | | | | |
1 ICAHYPNNTP LDFKVPLVPL IPALSLLINT LMMVHLAWIT WLRLVVWMSI GFVIYFGYGI 60
61 HHSKEEVQDA EKFSKSSTYE SVVSGVVAGA GTTSP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
