YRC Public Data Repository - Protein Structure Prediction

Protein:	CE08856
Organism:	Caenorhabditis elegans
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08856.

Description	E-value	Query Range	Subject Range
gi\|547239 - gi\|547239\|gb\|AAB31182.1\| p300=transcription coactivator {N-terminal} [mice, Peptide Partial, 688 aa]	185.0	[0..9]	[145..287]
gi\|49117594 - gi\|49117594\|gb\|AAH72594.1\| Crebbp protein [Mus musculus]	185.0	[0..8]	[145..307]
gi\|109127404 - gi\|109127404\|ref\|XP_001095225.1\| PREDICTED: CREB binding protein [Macaca mulatta]	183.0	[0..8]	[145..308]
CREBBP - CREB binding protein	182.0	[0..8]	[145..308]
gi\|114660667 - gi\|114660667\|ref\|XP_523285.2\| PREDICTED: CREB binding protein [Pan troglodytes]	182.0	[0..8]	[145..308]
gi\|73959049 - gi\|73959049\|ref\|XP_864433.1\| PREDICTED: similar to CREB-binding protein isoform 3 [Canis familiaris]	182.0	[0..8]	[145..308]
CBP_RAT - CREB-binding protein OS=Rattus norvegicus GN=Crebbp PE=1 SV=1 gi\|55742744 - ref\|NP_596872.2\| CREB binding protein [Rattus norvegicus]	181.0	[0..8]	[145..307]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGADKGPPIF DGATKKREVV VVITFQIFFA LLGAIQMISL SDPSRIDPHI LKVIKEQLIL  60
   61 LLHANVCTKR DRENYQAAIN GQPARHPRCD LPSCGLFKYT LSHLNMCTNG SHCLIDYCNT 120
  121 SKQLIKHWRE CQNRACAICA PLRRLQTFGG S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1l3eB
Description:	CREB-binding transcriptional adaptor protein CBP (p300)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits