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View Structure Prediction Details

Protein: CE08806
Organism: Caenorhabditis elegans
Length: 623 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08806.

Description E-value Query
Range
Subject
Range
PTPRA - protein tyrosine phosphatase, receptor type, A
516.0 [0..6] [621..44]

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Predicted Domain #1
Region A:
Residues: [1-153]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAKSSKKAK ISPPADRYYT KVDIESGPAV VAKSQDFILE VPVIPETCEE SIPDSRISRD  60
   61 VSEVSRVSSG SEVDVTGSGV DDEHLDIQSS DDSVESIFDP LLYLANQGID VTHSNIRELV 120
  121 CSENYREFLK QRKTMLTPKE LFELEHGRIP GNY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.39794
Match: 2b3oA
Description: Crystal structure of human tyrosine phosphatase SHP-1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [154-623]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKSKPKEEIL KEIDELECKA DDLLTDLSDD ENGWPKYDMN ALLEKYENHK DSEPNLLIPT  60
   61 KEDYERDKKT CCQQVLNSYE FDMVESSING HGLEFECLGP DATRTQDFWT QCHKDRISLI 120
  121 TMFGKFLEKR GANCKQYIPD DKQEILKCGQ IIVRRLTDPE YPYRHCKIQK FAVRCKLVPE 180
  181 NYGWYVVWHC QRDIQEYPSK DYTKEDEEFE NLRKDLLNDM PTQHWLFHGP MQFSPLRDRL 240
  241 VERNSYLIEK KGSSVPDFVT QPIQAANARK ALYEKSCYLG FLTSSSSQIS LSGCQSRQIG 300
  301 GADEVENLVK LETEEFDLQK SLGSYPIQSQ NRLNNVIQIY ANSPDPEQTQ DFWQMILHKG 360
  361 IPTIHTISDL DPEETANCAS YFPYGSESEK SCGIYTVKRL GIETQLSMNL KKQQLLIFKM 420
  421 GESEYQNVVN VTHFHEIVKN QVTDSKVRNI EIINEHVSRQ SNPQLLIHGP 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 128.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle