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View Structure Prediction Details

Protein: math-24
Organism: Caenorhabditis elegans
Length: 441 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for math-24.

Description E-value Query
Range
Subject
Range
math-23 - status:Predicted UniProt:O17191 protein_id:AAB70956.1
347.0 [0..1] [441..1]

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Predicted Domain #1
Region A:
Residues: [1-135]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKTFLLTH TFNDISKLGE EQSYYSDNEI RYNVPWRLQI FRKEGFLGLN LQCEKKECFG  60
   61 ERKWSFQTKF IMKLVAVSGK FFRRTVQHDF QKPEGNGMDK FIGWENMQRD YMDKDSIIIE 120
  121 IHANIVSSTG FFEVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 2cr2A
Description: Solution structure of N-terminal domain of speckle-type POZ protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.33435233481202 bayes_pls_golite062009
protein binding 0.90216988634563 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [136-268]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLPNSQPDSD NSFVMKHTFK NISRFVVKER DYSDLEEHFN IPWRMQIQKS NEFLGIFLYC  60
   61 EKEISEGRKW SIECEFDSRL ISASGKLHFI RTKSIFGATS GWGRGKFISW SDLEKDYVNN 120
  121 DSIYMEIRVK IIK

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.51
Match: 2f1xA
Description: Crystal structure of the TRAF-like domain of HAUSP/USP7 bound to a p53 peptide
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [269-441]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ITDEPCNIAN TERAFVLSHT VRNMSSIKEG GDYLTDIQTR FNIPWKLKIQ RLNGFIELFL  60
   61 RCAENMCESR KWSIETEYQL KLVSTNGRSL SLKNIKYVFD KPFGYGWLTL LRWDSLEEKY 120
  121 IVNDTLIIEA HVKILNMTGI VDEASVEKPS GIVIPVGDQE YSLEKWLEMA FDH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle