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View Structure Prediction Details

Protein: math-23
Organism: Caenorhabditis elegans
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for math-23.

Description E-value Query
Range
Subject
Range
math-24 - status:Partially_confirmed UniProt:O17190 protein_id:AAB70958.1
365.0 [0..1] [440..1]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRSFVLAH TFKDVSKLEE VGSYYSDIEV RHDIPWNIRI FKKEGFLGVN LHCEKEECFE  60
   61 AKKWSCQTKF TMKLVAIGGK FFRRTVQHEF QKPEGHGMDK FISWEKVLED YVDNDSIIIE 120
  121 IHANIVRSTG FFEVKYL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.154902
Match: 2cr2A
Description: Solution structure of N-terminal domain of speckle-type POZ protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.33435233481202 bayes_pls_golite062009
protein binding 0.90216988634563 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [138-278]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVSEHDSDNS FVLKHTFKNI SRFVELEKDF SDLEEHFNIP WRMQIQKSNE FLGIYLHCEK  60
   61 EICEGRNWAI ECEFEFRLIS ASGKLHSTEH KSIFGATPAW GRDTFISWNG MEKDYINNDS 120
  121 IDVEICVKII NNTDAPHNIA N

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 5.58
Match: 2f1xA
Description: Crystal structure of the TRAF-like domain of HAUSP/USP7 bound to a p53 peptide
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [279-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AERTFFLSHS VKNMSRIEEG EEYYTGIQTR FNIPWKLKIK KQSGFFGLFL HCFKQLDEFR  60
   61 KWSIETEYQL KVVSSNGRSV SFSFSYLFDK PFGYGWLKLL RWDNLEEKYI VNDTLVIEAH 120
  121 VKILNMTGIE DETAIVKSSG IVIPVGNQEY SLEKWLEMAF DH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.69897
Match: 2f1zA
Description: Crystal structure of HAUSP
Matching Structure (courtesy of the PDB):

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